Rh2DG004300

2-alkenal reductase (NADP( )-dependent)-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
278782 .. 280843
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG004300.1

Sequence Viewer

Length: 495 bp
ATGGCTAGTGGAGAAAAAGTGAGGAACAAGCAGGTTGATCTGCTGAAGAACAAATTTGGATTTGACGAGGCTTTCAACTATAAAGACGAACCTGACCTAGATGCAGCTTTAAGAAGGTACTTTCCAGATGGTATTGACATTTACTTTGAAAATGTGGGGGGAAAGATGCTTGATGCAGTGCTACCAAACATGAGGCTGAAAGGGCGAATAGCTGTGTGTGGGATGATCTCACAGTACAACCTCGAGCGGCCTGAAGGCATACATAATTTGATGTCTCTGATTGTTAAGCAGGTCCGAATGGAAGGTTTCCTGGTCTTCAGTTACTATCATCTGTACGGAAAGTTTCTTGAAACAGTGTTGCCTTACATAAAAGAAGGGAAGATAACATATGTGGAAGATGTAGTTGAAGGCCTTGAGAATGCTCCAGCGGCTCTAATTGGGCTCTTTTCTGGCCGCAATGTGGGAAAGCAGGTGGTTGTAGTTTCCAGAGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.6

Weight (kDa)

6.17

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 10 - 111 3.5e-14 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 20 - 159 8.1e-11 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 3 cut(s) 22, 280, 460
AccBSI CCGCTC 1 cut(s) 247
AciI CCGC 3 cut(s) 247, 428, 454
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 3 cut(s) 65, 273, 301
AfaI GTAC 3 cut(s) 119, 236, 335
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 4 cut(s) 76, 149, 350, 407
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 107, 212
AluI AGCT 2 cut(s) 107, 212
Alw26I GTCTC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 3 cut(s) 248, 409, 451
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 2 cut(s) 6, 98
BfuAI ACCTGC 3 cut(s) 22, 280, 460
BisI GCNGC 4 cut(s) 105, 248, 429, 454
BlsI GCNGC 4 cut(s) 106, 249, 430, 455
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 91, 156, 163
BpiI GAAGAC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 434
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 463
BseXI GCAGC 1 cut(s) 116
BshFI GGCC 3 cut(s) 250, 411, 453
BsiHKCI CYCGRG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 3 cut(s) 250, 411, 453
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 37, 225
BspACI CCGC 3 cut(s) 247, 428, 454
BspANI GGCC 3 cut(s) 250, 411, 453
BspMI ACCTGC 3 cut(s) 22, 280, 460
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 463
BssMI GATC 2 cut(s) 37, 225
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 234, 355
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 2 cut(s) 40, 228
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 2 cut(s) 37, 225
BstMWI GCNNNNNNNGC 2 cut(s) 202, 428
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 307
BsuRI GGCC 3 cut(s) 250, 411, 453
BtsCI GGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 360
BveI ACCTGC 3 cut(s) 22, 280, 460
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 3 cut(s) 118, 235, 334
CviAII CATG 1 cut(s) 190
CviQI GTAC 3 cut(s) 118, 235, 334
DpnI GATC 2 cut(s) 39, 227
DpnII GATC 2 cut(s) 37, 225
EaeI YGGCCR 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 3 cut(s) 65, 273, 301
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 1 cut(s) 193
FaiI YATR 7 cut(s) 81, 191, 260, 264, 368, 388, 390
FatI CATG 1 cut(s) 189
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 4 cut(s) 105, 248, 429, 454
FokI GGATG 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 4 cut(s) 105, 248, 429, 454
FspBI CTAG 2 cut(s) 6, 98
GluI GCNGC 4 cut(s) 105, 248, 429, 454
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 3 cut(s) 250, 411, 453
Hin1II CATG 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 279, 296
Hpy188III TCNNGA 3 cut(s) 125, 347, 486
HpyAV CCTTC 5 cut(s) 108, 248, 296, 368, 401
HpyCH4III ACNGT 2 cut(s) 234, 355
HpyCH4V TGCA 2 cut(s) 104, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 428
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 2 cut(s) 37, 225
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 3 cut(s) 91, 156, 163
MaeI CTAG 2 cut(s) 6, 98
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 39, 227
MbiI CCGCTC 1 cut(s) 247
MboI GATC 2 cut(s) 37, 225
MboII GAAGA 4 cut(s) 58, 307, 391, 407
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 3 cut(s) 53, 265, 435
MnlI CCTC 4 cut(s) 15, 61, 186, 251
MseI TTAA 2 cut(s) 110, 285
MspA1I CMGCKG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 202, 428
NdeI CATATG 1 cut(s) 388
NdeII GATC 2 cut(s) 37, 225
NlaIII CATG 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 242
PaqCI CACCTGC 1 cut(s) 460
PceI AGGCCT 1 cut(s) 411
PctI GAATGC 1 cut(s) 424
PkrI GCNGC 4 cut(s) 106, 249, 430, 455
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 1 cut(s) 292
PspXI VCTCGAGB 1 cut(s) 242
RsaI GTAC 3 cut(s) 119, 236, 335
RsaNI GTAC 3 cut(s) 118, 235, 334
SaqAI TTAA 2 cut(s) 110, 285
SatI GCNGC 4 cut(s) 105, 248, 429, 454
Sau3AI GATC 2 cut(s) 37, 225
Sau96I GGNCC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 3 cut(s) 91, 156, 163
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 242, 413
SmoI CTYRAG 2 cut(s) 242, 413
Sse9I AATT 3 cut(s) 53, 265, 435
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 3 cut(s) 247, 428, 454
SspMI CTAG 2 cut(s) 6, 98
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 234, 355
TaqI TCGA 1 cut(s) 243
TasI AATT 3 cut(s) 53, 265, 435
TatI WGTACW 1 cut(s) 234
TauI GCSGC 3 cut(s) 250, 431, 456
Tru1I TTAA 2 cut(s) 110, 285
Tru9I TTAA 2 cut(s) 110, 285
TscAI CASTG 2 cut(s) 183, 360
TseI GCWGC 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 2 cut(s) 183, 360
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 2 cut(s) 6, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.