Rw5G015810

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000196
Physical Location & Seq
Forward (+)
19651997 .. 19656320
4324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015810.1

Sequence Viewer

Length: 246 bp
ATGCCCTTTTCTGCAGAGAAGATAGGTATCTCATCTGGTATTGTGGAAGCTGTATATATCACCGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTACCACTACCAAACTCAAGCTTCCAGAAGGCCGGTTTGCGCTTCTTGATGAGGCGTCGGGTTCTGCCTTTTCTTCTTCTGATGCTTGTGGTGCTCAACCTCAGCGAAGATGGGATAGTTCTGGGCATGGATCTAGATCGGGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

81

Amino Acids

8.55

Weight (kDa)

6.55

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 152
AluBI AGCT 2 cut(s) 50, 118
AluI AGCT 2 cut(s) 50, 118
Alw21I GWGCWC 1 cut(s) 193
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 193
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 201
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 12
BmsI GCATC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 2 cut(s) 26, 232
BsaHI GRCGYC 1 cut(s) 152
Bse118I RCCGGY 2 cut(s) 62, 129
Bse8I GATNNNNATC 2 cut(s) 26, 232
BseJI GATNNNNATC 2 cut(s) 26, 232
BseMII CTCAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 63, 130
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 227, 233
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 235
BsrFI RCCGGY 2 cut(s) 62, 129
BssAI RCCGGY 2 cut(s) 62, 129
BssMI GATC 2 cut(s) 227, 233
BssNI GRCGYC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 2 cut(s) 230, 236
BstMBI GATC 2 cut(s) 227, 233
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 1 cut(s) 129
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 2 cut(s) 62, 129
CseI GACGC 1 cut(s) 141
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 50, 66, 118, 129
CviKI_1 RGCY 4 cut(s) 50, 66, 118, 129
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 229, 235
DpnII GATC 2 cut(s) 227, 233
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 55, 57, 225, 242
FatI CATG 1 cut(s) 223
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 129
HapII CCGG 2 cut(s) 63, 130
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 1 cut(s) 77
HpaII CCGG 2 cut(s) 63, 130
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 82, 178
Hpy188III TCNNGA 3 cut(s) 122, 143, 231
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 227, 233
LpnPI CCDG 5 cut(s) 21, 76, 135, 143, 204
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 231
MalI GATC 2 cut(s) 229, 235
MboI GATC 2 cut(s) 227, 233
MboII GAAGA 4 cut(s) 31, 162, 165, 216
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 95, 142, 207
MspI CCGG 2 cut(s) 63, 130
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 227, 233
NlaIII CATG 1 cut(s) 227
PfeI GAWTC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 227
Sau3AI GATC 2 cut(s) 227, 233
SduI GDGCHC 1 cut(s) 193
SetI ASST 5 cut(s) 28, 52, 87, 120, 199
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 231
TasI AATT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 230
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.