Rroxscaffold_2G00155450

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000196
Physical Location & Seq
Forward (+)
91843319 .. 91851570
8252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155450.1

Sequence Viewer

Length: 339 bp
ATGTCGATCCCTTCAACCCCGGCGAGCGGTTTTGGCGTGGCTAAAGTTTTGGAATCTGGGGATGCAAGGTTTAAGCAAGGCGACTTGGTTTGGGGAACGATTGGCTGGGAAGAGTATAGTCTCATCACTTCCATTCAGTATTTGTGTATGCCTGGTATGACTGCCTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTTCGTTTCAGCAGCATCAGGAGTGGTAGGTCAGCTTGTTGGGCCAATTTTTGCCAAGTTGGCCGGATGCTATGTTGTGGGGAGTGCTGGAAGCAAAGACAAGATGCTTGATGCAGCGCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

112

Amino Acids

11.66

Weight (kDa)

5.21

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 9 - 42 3.6e-07 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AciI CCGC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 273
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 2 cut(s) 26, 200
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 125, 200
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 2 cut(s) 254, 273
ApeKI GCWGC 2 cut(s) 224, 326
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 125, 200
BfoI RGCGCY 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 272
BglII AGATCT 1 cut(s) 183
BisI GCNGC 2 cut(s) 225, 327
BlsI GCNGC 2 cut(s) 226, 328
Bme1390I CCNGG 2 cut(s) 20, 153
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 20, 153
BmsI GCATC 5 cut(s) 52, 236, 269, 306, 313
BpiI GAAGAC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 200
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 67, 284
BseLI CCNNNNNNNGG 2 cut(s) 26, 200
BseXI GCAGC 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 105
BshFI GGCC 2 cut(s) 256, 275
BsiSI CCGG 2 cut(s) 20, 276
BslI CCNNNNNNNGG 2 cut(s) 26, 200
BsmAI GTCTC 2 cut(s) 125, 200
BsnI GGCC 2 cut(s) 256, 275
Bsp143I GATC 2 cut(s) 6, 183
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 256, 275
BsrBI CCGCTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 6, 183
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 195
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 67, 284
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 9, 186
BstMAI GTCTC 2 cut(s) 125, 200
BstMBI GATC 2 cut(s) 6, 183
BstMWI GCNNNNNNNGC 3 cut(s) 33, 253, 272
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 18, 151
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 2 cut(s) 256, 275
BtsCI GGATG 2 cut(s) 67, 284
Cac8I GCNNGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 254
CviJI RGCY 5 cut(s) 41, 105, 247, 256, 275
CviKI_1 RGCY 5 cut(s) 41, 105, 247, 256, 275
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 8, 185
DpnII GATC 2 cut(s) 6, 183
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco47III AGCGCT 1 cut(s) 330
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 151
FaiI YATR 6 cut(s) 117, 149, 158, 168, 180, 285
Fnu4HI GCNGC 2 cut(s) 225, 327
FokI GGATG 2 cut(s) 74, 291
Fsp4HI GCNGC 2 cut(s) 225, 327
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 225, 327
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 256, 275
HapII CCGG 2 cut(s) 20, 276
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 20, 276
Hpy188III TCNNGA 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 65, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 253, 272
HpyF3I CTNAG 1 cut(s) 195
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 6, 183
LpnPI CCDG 9 cut(s) 33, 42, 91, 138, 156, 165, 216, 285, 289
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 5 cut(s) 52, 236, 269, 306, 313
MalI GATC 2 cut(s) 8, 185
MbiI CCGCTC 1 cut(s) 27
MboI GATC 2 cut(s) 6, 183
MboII GAAGA 2 cut(s) 122, 205
MflI RGATCY 1 cut(s) 183
MluCI AATT 1 cut(s) 258
MseI TTAA 1 cut(s) 72
MspI CCGG 2 cut(s) 20, 276
MspR9I CCNGG 2 cut(s) 20, 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 33, 253, 272
NciI CCSGG 1 cut(s) 20
NdeII GATC 2 cut(s) 6, 183
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 226, 328
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 183
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 225, 327
Sau3AI GATC 2 cut(s) 6, 183
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 20, 153
SetI ASST 3 cut(s) 71, 244, 249
SfaNI GCATC 5 cut(s) 52, 236, 269, 306, 313
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 18, 151
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 258
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 2 cut(s) 224, 326
XagI CCTNNNNNAGG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.