Rh2BG008600

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000196
Physical Location & Seq
Reverse (-)
598710 .. 603410
4701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG008600.1

Sequence Viewer

Length: 528 bp
ATGGCTAGTGGAGAAGAAGTGAGGAACAAGCAGGTGATATTCGGAGACTATATCACCGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTGCCACTACCAAACTCAAGCTTCCAGAAGGTTCGACGGGCCTCCTCGTCAAGAACCTCTACTTGTCCTGCGATCCTTACATGCGAAGCCGTATGACCAAGCACGACAGGCCCACTTATGTCCAATCCTTCACGCCCGGCTCGGTTTTGAGAAACAGAGAGAAGAAAATAGCAATGGCGAGTGGTGTAGAAAGAGAGCAAGTAGTGAGGAACAAGCAGGTGCTATTCAAAGACTATGTCACCGACTTCCCCATAGAATCTAACATGCAACTGACCACTAGTACAGCCACACTGAAGCTCCCACAAGGTTCCACTGGTGTTCTGGTCAAGAACCTCTACTTGTCCTGCGATCCTTATACTAAAGTCCATATGACCAAGGCTAGCTCTGATACTCCTTCTTATATCAAAACCTTCACTCCTGGTTCGGTCAGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

175

Amino Acids

19.55

Weight (kDa)

9.47

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 10 - 81 2.3e-11 N-terminal domain of oxidoreductase
ADH_N_2 PF16884 102 - 162 3.1e-07 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 22, 298
Acc36I ACCTGC 2 cut(s) 22, 298
AclWI GGATC 2 cut(s) 158, 434
AcuI CTGAAG 1 cut(s) 404
AfaI GTAC 1 cut(s) 373
AgsI TTSAA 1 cut(s) 319
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 3 cut(s) 112, 388, 474
AluI AGCT 3 cut(s) 112, 388, 474
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 158, 434
AoxI GGCC 2 cut(s) 130, 200
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
AspS9I GGNCC 2 cut(s) 130, 201
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 3 cut(s) 46, 46, 322
AsuNHI GCTAGC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 3 cut(s) 6, 369, 471
BfuAI ACCTGC 2 cut(s) 22, 298
Bme1390I CCNGG 2 cut(s) 228, 510
BmgT120I GGNCC 2 cut(s) 130, 201
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 228, 510
BmtI GCTAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 5 cut(s) 33, 372, 402, 490, 520
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 409
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 465
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 409
BseRI GAGGAG 1 cut(s) 125
BshFI GGCC 2 cut(s) 132, 202
BsiSI CCGG 2 cut(s) 57, 228
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 2 cut(s) 132, 202
Bsp143I GATC 2 cut(s) 163, 439
BspANI GGCC 2 cut(s) 132, 202
BspLI GGNNCC 1 cut(s) 400
BspMI ACCTGC 2 cut(s) 22, 298
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 2 cut(s) 158, 434
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 2 cut(s) 163, 439
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 472
BstKTI GATC 2 cut(s) 166, 442
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 163, 439
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 2 cut(s) 175, 358
BstSCI CCNGG 2 cut(s) 226, 508
BsuRI GGCC 2 cut(s) 132, 202
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 3 cut(s) 90, 380, 402
BveI ACCTGC 2 cut(s) 22, 298
Cac8I GCNNGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 130, 201
Csp6I GTAC 1 cut(s) 372
CviAII CATG 2 cut(s) 172, 355
CviQI GTAC 1 cut(s) 372
DpnI GATC 2 cut(s) 165, 441
DpnII GATC 2 cut(s) 163, 439
Eco130I CCWWGG 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 175, 358
FatI CATG 2 cut(s) 171, 354
FauNDI CATATG 1 cut(s) 459
FspBI CTAG 3 cut(s) 6, 369, 471
HaeIII GGCC 2 cut(s) 132, 202
HapII CCGG 2 cut(s) 57, 228
Hin1II CATG 2 cut(s) 175, 358
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 71, 347
HpaII CCGG 2 cut(s) 57, 228
HphI GGTGA 3 cut(s) 46, 46, 322
Hpy188I TCNGA 3 cut(s) 44, 76, 478
Hpy188III TCNNGA 3 cut(s) 116, 142, 418
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 113, 229, 495, 511
HpyCH4V TGCA 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
Hsp92II CATG 2 cut(s) 175, 358
Kzo9I GATC 2 cut(s) 163, 439
LmnI GCTCC 1 cut(s) 393
MaeI CTAG 3 cut(s) 6, 369, 471
MaeIII GTNAC 2 cut(s) 328, 521
MalI GATC 2 cut(s) 165, 441
MboI GATC 2 cut(s) 163, 439
MboII GAAGA 2 cut(s) 26, 265
MluCI AATT 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 7 cut(s) 15, 89, 143, 146, 158, 291, 434
MspI CCGG 2 cut(s) 57, 228
MspR9I CCNGG 2 cut(s) 228, 510
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 459
NdeII GATC 2 cut(s) 163, 439
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 2 cut(s) 175, 358
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 328, 521
NspI RCATGY 2 cut(s) 175, 358
PaqCI CACCTGC 2 cut(s) 22, 298
PfeI GAWTC 2 cut(s) 71, 347
PflFI GACNNNGTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 2 cut(s) 130, 201
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 163, 439
Sau96I GGNCC 2 cut(s) 130, 201
ScrFI CCNGG 2 cut(s) 228, 510
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 1 cut(s) 83
SspMI CTAG 3 cut(s) 6, 369, 471
StyD4I CCNGG 2 cut(s) 226, 508
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 1 cut(s) 125
TaqII GACCGA 1 cut(s) 505
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 2 cut(s) 71, 347
TscAI CASTG 3 cut(s) 97, 387, 409
TseFI GTSAC 2 cut(s) 328, 521
Tsp45I GTSAC 2 cut(s) 328, 521
TspRI CASTG 3 cut(s) 97, 387, 409
Tth111I GACNNNGTC 1 cut(s) 326
XceI RCATGY 2 cut(s) 175, 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XspI CTAG 3 cut(s) 6, 369, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.