Rroxscaffold_2G00155840

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000196
Physical Location & Seq
Reverse (-)
92331260 .. 92331917
658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155840.1

Sequence Viewer

Length: 480 bp
ATGGCAGCTCGTAGGAAGAAGATCGAAGTTTCCTCTTATACCGTTGACATGTACAAACCTGATCAGCCATTAAGTGGATATGGAGTGGCTAAAGTTTTAGACTCTGCGCATCCAAACTTCACGAAAGGTGACTTGGTTTGGGGTTTTACTACATGGGAAGAGTACGGTGTCATCACCGCAATAGAATCTTTGATCAAAATTCAACACACTTTGATGTGCCTCTCTCTTACTATACTTGGAATTCTTGGTATGCAGGTACGACCGATTATCTTTGGTTTCTATGAGGTTTGCAATCCTAAGCCGAGTGAGAGAGTCTATGTTTCAGCTGCATCTAGTGCAATTGGTCAAGCTATTGGGTTGCTATGTTGTTGGCGTGCTGGAACCAAAGACAAGGTGGATCTATTGATGAACAAGTTCGGATTCAATGATGCTTTTAGATATAAAGAGGAGCCCGACTTGGTTGTAGCTTTGAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

159

Amino Acids

17.8

Weight (kDa)

8.65

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 9 - 60 2.1e-09 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 108
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 405
AcsI RAATTY 2 cut(s) 198, 240
AfaI GTAC 3 cut(s) 53, 164, 258
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 2 cut(s) 203, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 4 cut(s) 8, 326, 350, 467
AluI AGCT 4 cut(s) 8, 326, 350, 467
AlwI GGATC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 5, 326
ApoI RAATTY 2 cut(s) 198, 240
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 140, 166
BanII GRGCYC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 17, 313
BclI TGATCA 2 cut(s) 61, 192
BfaI CTAG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 2 cut(s) 6, 327
BlsI GCNGC 2 cut(s) 7, 328
BmiI GGNNCC 2 cut(s) 382, 450
BmsI GCATC 3 cut(s) 118, 338, 418
Bpu10I CCTNAGC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 17, 313
Bsh1285I CGRYCG 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 4 cut(s) 21, 61, 192, 397
BspACI CCGC 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 382, 450
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 51
BssMI GATC 4 cut(s) 21, 61, 192, 397
Bst4CI ACNGT 2 cut(s) 43, 167
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 4 cut(s) 24, 64, 195, 400
BstMBI GATC 4 cut(s) 21, 61, 192, 397
BstMCI CGRYCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 17, 313
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BtsCI GGATG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 3 cut(s) 52, 163, 257
CviAII CATG 2 cut(s) 49, 153
CviJI RGCY 8 cut(s) 8, 67, 89, 301, 326, 350, 451, 467
CviKI_1 RGCY 8 cut(s) 8, 67, 89, 301, 326, 350, 451, 467
CviQI GTAC 3 cut(s) 52, 163, 257
DdeI CTNAG 1 cut(s) 297
DpnI GATC 4 cut(s) 23, 63, 194, 399
DpnII GATC 4 cut(s) 21, 61, 192, 397
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 453
FaeI CATG 2 cut(s) 52, 156
FatI CATG 2 cut(s) 48, 152
FbaI TGATCA 2 cut(s) 61, 192
Fnu4HI GCNGC 2 cut(s) 6, 327
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 2 cut(s) 6, 327
FspBI CTAG 1 cut(s) 333
FspI TGCGCA 1 cut(s) 108
GlaI GCGC 1 cut(s) 108
GluI GCNGC 2 cut(s) 6, 327
HhaI GCGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 52, 156
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 4 cut(s) 101, 185, 312, 420
HphI GGTGA 2 cut(s) 140, 166
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 419
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 43, 167
HpyCH4V TGCA 4 cut(s) 253, 291, 329, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 52, 156
HspAI GCGC 1 cut(s) 107
Ksp22I TGATCA 2 cut(s) 61, 192
Kzo9I GATC 4 cut(s) 21, 61, 192, 397
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 3 cut(s) 72, 239, 363
Lsp1109I GCAGC 2 cut(s) 17, 313
LweI GCATC 3 cut(s) 118, 338, 418
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 128
MalI GATC 4 cut(s) 23, 63, 194, 399
MboI GATC 4 cut(s) 21, 61, 192, 397
MboII GAAGA 3 cut(s) 28, 31, 170
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 3 cut(s) 198, 240, 339
MlyI GAGTC 2 cut(s) 95, 321
MnlI CCTC 4 cut(s) 43, 230, 277, 439
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 326
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 4 cut(s) 21, 61, 192, 397
NlaIII CATG 2 cut(s) 52, 156
NlaIV GGNNCC 2 cut(s) 382, 450
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 128
NsbI TGCGCA 1 cut(s) 108
NspI RCATGY 1 cut(s) 52
PciI ACATGT 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 185, 420
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 2 cut(s) 7, 328
PleI GAGTC 2 cut(s) 95, 320
PpsI GAGTC 2 cut(s) 95, 320
PscI ACATGT 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 382, 450
PsuI RGATCY 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 3 cut(s) 53, 164, 258
RsaNI GTAC 3 cut(s) 52, 163, 257
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 6, 327
Sau3AI GATC 4 cut(s) 21, 61, 192, 397
SchI GAGTC 2 cut(s) 95, 321
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 3 cut(s) 118, 338, 418
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 3 cut(s) 198, 240, 339
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 43, 167
TaqI TCGA 1 cut(s) 24
TaqII GACCGA 1 cut(s) 277
TasI AATT 3 cut(s) 198, 240, 339
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 2 cut(s) 185, 420
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 5, 326
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 74
XapI RAATTY 2 cut(s) 198, 240
XceI RCATGY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.