Rh5CG167200

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000196
Physical Location & Seq
Forward (+)
15601866 .. 15603348
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG167200.1

Sequence Viewer

Length: 234 bp
ATGGTATCAGAGCTTAGGTTCATACCTCGGACCGGGGCTGCCCATCAGACCATTTGTCCTGTAATTGGTTTGGGAGTGGCTAAAGTCCTGGAATCTAGGGATCCAAAGTTTAAGCCAGGGGACTTGGTTTGGGGTCACACTGGTTGGGAAGAATATAGTGTCATCACCACAGAGTCTCTGATTAAGATTCACACACTGATGTGCCTCTCTCTTACTATACTGGACTTCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

77

Amino Acids

8.55

Weight (kDa)

6.25

Isoelectric Point (pI)

26.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 20 - 63 4.2e-11 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 95, 108
AfiI CCNNNNNNNGG 2 cut(s) 32, 65
AhdI GACNNNNNGTC 1 cut(s) 54
AjnI CCWGG 2 cut(s) 87, 115
AleI CACNNNNGTG 1 cut(s) 199
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 2 cut(s) 95, 108
ApeKI GCWGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 30
BamHI GGATCC 1 cut(s) 100
BauI CACGAG 1 cut(s) 229
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 2 cut(s) 89, 117
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 34, 89, 117
Bme18I GGWCC 1 cut(s) 30
BmeRI GACNNNNNGTC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 3 cut(s) 34, 89, 117
Bpu10I CCTNAGC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 3 cut(s) 26, 33, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 65
Bse1I ACTGG 2 cut(s) 145, 225
BseBI CCWGG 2 cut(s) 89, 117
BseDI CCNNGG 3 cut(s) 26, 33, 116
BseLI CCNNNNNNNGG 2 cut(s) 32, 65
BseNI ACTGG 2 cut(s) 145, 225
BseXI GCAGC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 32, 65
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 95, 108
BsrI ACTGG 2 cut(s) 145, 225
BssECI CCNNGG 3 cut(s) 26, 33, 116
BssMI GATC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 89, 117
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 100
BstNI CCWGG 2 cut(s) 89, 117
BstSCI CCNGG 3 cut(s) 32, 87, 115
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 138, 194
Cfr13I GGNCC 1 cut(s) 30
CpoI CGGWCCG 1 cut(s) 30
CspI CGGWCCG 1 cut(s) 30
CviJI RGCY 4 cut(s) 13, 38, 80, 115
CviKI_1 RGCY 4 cut(s) 13, 38, 80, 115
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DriI GACNNNNNGTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 87, 115
FaiI YATR 3 cut(s) 23, 156, 218
FaqI GGGAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 39
HapII CCGG 1 cut(s) 33
HinfI GANTC 3 cut(s) 92, 173, 187
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 4 cut(s) 10, 30, 48, 180
Hpy188III TCNNGA 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 14
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 46, 72, 74, 101, 102, 126, 129, 206
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 2 cut(s) 36, 215
MseI TTAA 2 cut(s) 111, 183
MslI CAYNNNNRTG 2 cut(s) 197, 199
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 3 cut(s) 34, 89, 117
MvaI CCWGG 2 cut(s) 89, 117
NciI CCSGG 1 cut(s) 34
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 199
PfeI GAWTC 2 cut(s) 92, 187
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 87, 115
PspGI CCWGG 2 cut(s) 87, 115
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 197, 199
Rsr2I CGGWCCG 1 cut(s) 30
RsrII CGGWCCG 1 cut(s) 30
SaqAI TTAA 2 cut(s) 111, 183
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 3 cut(s) 34, 89, 117
SetI ASST 3 cut(s) 15, 20, 28
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 197, 199
Sse9I AATT 1 cut(s) 63
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 32, 87, 115
TasI AATT 1 cut(s) 63
TfiI GAWTC 2 cut(s) 92, 187
Tru1I TTAA 2 cut(s) 111, 183
Tru9I TTAA 2 cut(s) 111, 183
TscAI CASTG 2 cut(s) 145, 201
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 2 cut(s) 145, 201
VpaK11BI GGWCC 1 cut(s) 30
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.