Rw7G038530

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000196
Physical Location & Seq
Reverse (-)
58854034 .. 58857816
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038530.1

Sequence Viewer

Length: 612 bp
ATGTCACGAACTAGCCCAACTAGCCAGGACAAAAGGATGGAGTGGGCTGCTGCTTTTCACCAAAGGAGTTTTAAACACCAAAGTGGGCCCACCGACGAGATCCATAACAACGAGCTCAAAGCAATCAGCTTGGACGTCAACCATTATCCTCACCCACTTTACAATTACACCTCTCTGCGTGTTCTTGAGCCTATCAGCGGTTTTGGCATGGCTAAAGTTTTGGAATCTGGGGATGCAAAGTTTAAGCAAGGCAACTTGGTTTGGGAAATGACTGGCTGGAAATGGTATAGTCTCATCACTTTCATTCAGTATTTGTTTAAGATTCCCACCACCGACGGTATGCGTGGTTTGACTGCCTATGCTGGTTTTTATGAGATCTTCTCTCCTAAGAAAGGAGAGACGGTCTTCGTTTCATTGGCATCAGAAGCGGTAGGTCAGCTTGTTGGCCAATTTGCCAAGTTGGCCAGGTGCTATGTTGTTGGGAGTGCTGGAAGCAAAGACAAGGTTGATTTGCTGAAGAACAAGTTTCGCTTTGACCAGAAAGTCAGTAAAATGGATCACAAAAGAGGTGGACTAAAGCATGCACAAGTTTGGTTTTTGGGAAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

203

Amino Acids

23.03

Weight (kDa)

9.61

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 57 - 98 4.3e-06 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AatII GACGTC 1 cut(s) 138
AciI CCGC 2 cut(s) 198, 428
AclWI GGATC 2 cut(s) 94, 564
AcoI YGGCCR 2 cut(s) 445, 462
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 197, 392
AjnI CCWGG 2 cut(s) 24, 464
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 3 cut(s) 115, 129, 439
AluI AGCT 3 cut(s) 115, 129, 439
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 2 cut(s) 296, 392
AlwI GGATC 2 cut(s) 94, 564
AoxI GGCC 3 cut(s) 86, 445, 462
ApaI GGGCCC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 47, 50
AspS9I GGNCC 2 cut(s) 86, 87
AsuHPI GGTGA 2 cut(s) 50, 143
BaeGI GKGCMC 1 cut(s) 90
BalI TGGCCA 2 cut(s) 447, 464
BanII GRGCYC 2 cut(s) 90, 117
BbsI GAAGAC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 34, 37
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 26, 466
BcoDI GTCTC 2 cut(s) 296, 392
BfaI CTAG 2 cut(s) 12, 21
BglI GCCNNNNNGGC 1 cut(s) 461
BglII AGATCT 1 cut(s) 375
BisI GCNGC 2 cut(s) 48, 51
BlsI GCNGC 2 cut(s) 49, 52
Bme1390I CCNGG 2 cut(s) 26, 466
BmgT120I GGNCC 2 cut(s) 86, 87
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 26, 466
BmsI GCATC 2 cut(s) 223, 428
BpiI GAAGAC 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpuEI CTTGAG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 392
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 26, 466
BseGI GGATG 2 cut(s) 42, 238
BseLI CCNNNNNNNGG 2 cut(s) 197, 392
BseNI ACTGG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 2 cut(s) 34, 37
BshFI GGCC 3 cut(s) 88, 447, 464
BsiHKAI GWGCWC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 197, 392
BsmAI GTCTC 2 cut(s) 296, 392
BsmBI CGTCTC 1 cut(s) 392
BsnI GGCC 3 cut(s) 88, 447, 464
Bsp120I GGGCCC 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 90, 117
Bsp143I GATC 3 cut(s) 99, 375, 556
BspACI CCGC 2 cut(s) 198, 428
BspANI GGCC 3 cut(s) 88, 447, 464
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 94, 564
BsrI ACTGG 1 cut(s) 277
BssMI GATC 3 cut(s) 99, 375, 556
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 26, 466
Bst4CI ACNGT 2 cut(s) 338, 403
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 387
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 42, 238
BstKTI GATC 3 cut(s) 102, 378, 559
BstMAI GTCTC 2 cut(s) 296, 392
BstMBI GATC 3 cut(s) 99, 375, 556
BstMWI GCNNNNNNNGC 4 cut(s) 21, 204, 425, 461
BstNI CCWGG 2 cut(s) 26, 466
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 24, 464
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 34, 37
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 2 cut(s) 99, 375
BstYI RGATCY 2 cut(s) 99, 375
BsuRI GGCC 3 cut(s) 88, 447, 464
BtsCI GGATG 2 cut(s) 42, 238
Cac8I GCNNGC 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 86, 87
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 2 cut(s) 208, 581
DdeI CTNAG 1 cut(s) 387
DpnI GATC 3 cut(s) 101, 377, 558
DpnII GATC 3 cut(s) 99, 375, 556
DraI TTTAAA 1 cut(s) 73
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 2 cut(s) 445, 462
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 90, 117
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 24, 464
EcoT38I GRGCYC 2 cut(s) 90, 117
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 2 cut(s) 211, 584
FaiI YATR 8 cut(s) 105, 209, 288, 341, 360, 372, 474, 582
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 2 cut(s) 207, 580
Fnu4HI GCNGC 2 cut(s) 48, 51
FokI GGATG 2 cut(s) 49, 245
FriOI GRGCYC 2 cut(s) 90, 117
Fsp4HI GCNGC 2 cut(s) 48, 51
FspBI CTAG 2 cut(s) 12, 21
GluI GCNGC 2 cut(s) 48, 51
HaeIII GGCC 3 cut(s) 88, 447, 464
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 211, 584
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 2 cut(s) 224, 322
HphI GGTGA 2 cut(s) 50, 143
Hpy166II GTNNAC 2 cut(s) 139, 572
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 6, 185
Hpy8I GTNNAC 2 cut(s) 139, 572
Hpy99I CGWCG 2 cut(s) 98, 338
HpyCH4III ACNGT 2 cut(s) 338, 403
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 236, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 204, 425, 461
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 211, 584
Kzo9I GATC 3 cut(s) 99, 375, 556
Lsp1109I GCAGC 2 cut(s) 34, 37
LweI GCATC 2 cut(s) 223, 428
MaeI CTAG 2 cut(s) 12, 21
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 101, 377, 558
MboI GATC 3 cut(s) 99, 375, 556
MboII GAAGA 3 cut(s) 370, 397, 529
MflI RGATCY 2 cut(s) 99, 375
MhlI GDGCHC 2 cut(s) 90, 117
MlsI TGGCCA 2 cut(s) 447, 464
MluCI AATT 2 cut(s) 163, 449
MluNI TGGCCA 2 cut(s) 447, 464
MnlI CCTC 3 cut(s) 159, 181, 560
Mox20I TGGCCA 2 cut(s) 447, 464
MscI TGGCCA 2 cut(s) 447, 464
MseI TTAA 3 cut(s) 72, 243, 318
MslI CAYNNNNRTG 1 cut(s) 81
Msp20I TGGCCA 2 cut(s) 447, 464
MspA1I CMGCKG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 26, 466
MvaI CCWGG 2 cut(s) 26, 466
MwoI GCNNNNNNNGC 4 cut(s) 21, 204, 425, 461
NdeII GATC 3 cut(s) 99, 375, 556
NlaIII CATG 2 cut(s) 211, 584
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 584
OliI CACNNNNGTG 1 cut(s) 81
PaeI GCATGC 1 cut(s) 584
PfeI GAWTC 2 cut(s) 224, 322
PkrI GCNGC 2 cut(s) 49, 52
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 24, 464
PspGI CCWGG 2 cut(s) 24, 464
PspN4I GGNNCC 1 cut(s) 88
PspOMI GGGCCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 86, 87
PsuI RGATCY 2 cut(s) 99, 375
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 72, 243, 318
SatI GCNGC 2 cut(s) 48, 51
Sau3AI GATC 3 cut(s) 99, 375, 556
Sau96I GGNCC 2 cut(s) 86, 87
ScrFI CCNGG 2 cut(s) 26, 466
SduI GDGCHC 2 cut(s) 90, 117
SetI ASST 9 cut(s) 117, 131, 138, 173, 436, 441, 470, 507, 571
SfaNI GCATC 2 cut(s) 223, 428
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 584
Sse9I AATT 2 cut(s) 163, 449
SsiI CCGC 2 cut(s) 198, 428
SspMI CTAG 2 cut(s) 12, 21
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 24, 464
TaaI ACNGT 2 cut(s) 338, 403
TaiI ACGT 1 cut(s) 138
TasI AATT 2 cut(s) 163, 449
TfiI GAWTC 2 cut(s) 224, 322
Tru1I TTAA 3 cut(s) 72, 243, 318
Tru9I TTAA 3 cut(s) 72, 243, 318
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 47, 50
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 292, 402
XagI CCTNNNNNAGG 1 cut(s) 390
XceI RCATGY 1 cut(s) 584
XspI CTAG 2 cut(s) 12, 21
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.