Rmu_sc0004966.1_g000016

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004966.1
OG0000196
Physical Location & Seq
Reverse (-)
82084 .. 82401
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004966.1_g000016.1.cds

Sequence Viewer

Length: 318 bp
atgattaatgaactactgtctgtccttgttaaacttttcagattagtgatttcgcaatccaattgcgagcaacacgaagggatcaccaatttgatgcacctgatttacaagcgcattcgcatggaaggcttcttcgtgtttgatttctaccacctctaccccaagttcttggacctggtggtgccttacatcaaggaagggaagatcgcctatgtggaggacatagttgaaggacttgagaatggtcctgcttctctagtacgccttttcagtggtcgcaatgctggaaaaggagtcgttgcagttgctcgcgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

105

Amino Acids

12.02

Weight (kDa)

6.83

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AccII CGCG 1 cut(s) 312
AclWI GGATC 1 cut(s) 89
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 174
AlwI GGATC 1 cut(s) 89
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 172, 245
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 172, 245
BanI GGYRCC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 176
BfaI CTAG 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 172, 245
BmgT120I GGNCC 2 cut(s) 172, 245
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 81, 204
Bsp68I TCGCGA 1 cut(s) 312
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 286
BssMI GATC 2 cut(s) 81, 204
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 68, 310
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 84, 207
BstMBI GATC 2 cut(s) 81, 204
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstUI CGCG 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 277
BtuMI TCGCGA 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 68, 310
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 172, 245
CsiI ACCWGGT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 260
CviAII CATG 1 cut(s) 121
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
CviQI GTAC 1 cut(s) 260
DpnI GATC 2 cut(s) 83, 206
DpnII GATC 2 cut(s) 81, 204
Eco47I GGWCC 2 cut(s) 172, 245
EcoRII CCWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 124
FaiI YATR 3 cut(s) 122, 213, 224
FatI CATG 1 cut(s) 120
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 294
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 71, 119, 191, 224
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 97, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 81, 204
LpnPI CCDG 5 cut(s) 113, 161, 188, 261, 270
LweI GCATC 1 cut(s) 84
MabI ACCWGGT 1 cut(s) 174
MaeI CTAG 1 cut(s) 257
MalI GATC 2 cut(s) 83, 206
MboI GATC 2 cut(s) 81, 204
MboII GAAGA 2 cut(s) 124, 214
MfeI CAATTG 1 cut(s) 61
MluCI AATT 2 cut(s) 61, 88
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 2 cut(s) 164, 211
MseI TTAA 2 cut(s) 6, 30
MslI CAYNNNNRTG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 81, 204
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 183
NruI TCGCGA 1 cut(s) 312
PctI GAATGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PshBI ATTAAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 172, 245
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 6, 30
Sau3AI GATC 2 cut(s) 81, 204
Sau96I GGNCC 2 cut(s) 172, 245
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 176
SetI ASST 3 cut(s) 102, 156, 177
SexAI ACCWGGT 1 cut(s) 174
SfaNI GCATC 1 cut(s) 84
SinI GGWCC 2 cut(s) 172, 245
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 61, 88
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 18
TasI AATT 2 cut(s) 61, 88
Tru1I TTAA 2 cut(s) 6, 30
Tru9I TTAA 2 cut(s) 6, 30
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 172, 245
VspI ATTAAT 1 cut(s) 6
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.