Rmu_sc0012119.1_g000006

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012119.1
OG0000196
Physical Location & Seq
Reverse (-)
12025 .. 13273
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012119.1_g000006.1.cds

Sequence Viewer

Length: 627 bp
atgcctggaatgactgcttatgctggtttttatgagatctgctctcctaagaaaggagagacaatctacatttcagccgcatctggagcagtaggtcagcttgttggccaatttgcaaagttaacaggttgttatgttgttgggagtgctggaagcaaggaaaaggttgatctgctgaagaacaaatttggatttgacgaggctttcaactataaagacgaacctgacctagatgcagctttaagaaggtactttccagatggtattgacatttactttgaaaatgtggggggaaagatgcttgatgcagtgctaccaaacatgaggctgaaagggcgaatagctgtgtgtgggatgatctcacagtacaacctcgagcggcctgaaggcatacataatttgatgtctctgattgttaagcaggtccgaatggaaggtttcctggtcttcagttactatcatctgtatggaaagtttcttgaaacagtgttgccttacataaaagaagggaagataacatatgtggaagatgtagttgaaggccttgagaatgctccagcggctctaattgggctcttttctggccgcaatgtgggaaagcaggtggttgtagtttccagagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

208

Amino Acids

22.98

Weight (kDa)

6.18

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 592
Acc36I ACCTGC 2 cut(s) 412, 592
AccBSI CCGCTC 1 cut(s) 379
AciI CCGC 4 cut(s) 78, 379, 560, 586
AcoI YGGCCR 2 cut(s) 106, 583
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 3 cut(s) 197, 405, 433
AfaI GTAC 2 cut(s) 251, 368
AfiI CCNNNNNNNGG 2 cut(s) 53, 592
AgsI TTSAA 4 cut(s) 208, 281, 482, 539
AjnI CCWGG 2 cut(s) 4, 441
AluBI AGCT 3 cut(s) 100, 239, 344
AluI AGCT 3 cut(s) 100, 239, 344
Alw26I GTCTC 2 cut(s) 53, 411
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 4 cut(s) 106, 380, 541, 583
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspS9I GGNCC 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 108
BanII GRGCYC 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 6, 443
BcoDI GTCTC 2 cut(s) 53, 411
BfaI CTAG 1 cut(s) 230
BfuAI ACCTGC 2 cut(s) 412, 592
BglII AGATCT 1 cut(s) 36
BisI GCNGC 5 cut(s) 78, 237, 380, 561, 586
BlsI GCNGC 5 cut(s) 79, 238, 381, 562, 587
Bme1390I CCNGG 2 cut(s) 6, 443
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 424
BmrFI CCNGG 2 cut(s) 6, 443
BmsI GCATC 4 cut(s) 89, 223, 288, 295
BpiI GAAGAC 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 2 cut(s) 105, 540
BpuEI CTTGAG 1 cut(s) 566
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 592
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 2 cut(s) 6, 443
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 53, 592
BseMI GCAATG 1 cut(s) 595
BseXI GCAGC 1 cut(s) 248
BshFI GGCC 4 cut(s) 108, 382, 543, 585
BsiHKCI CYCGRG 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 53, 592
BsmAI GTCTC 2 cut(s) 53, 411
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 4 cut(s) 108, 382, 543, 585
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 3 cut(s) 36, 169, 357
BspACI CCGC 4 cut(s) 78, 379, 560, 586
BspANI GGCC 4 cut(s) 108, 382, 543, 585
BspMI ACCTGC 2 cut(s) 412, 592
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 595
BssMI GATC 3 cut(s) 36, 169, 357
Bst2UI CCWGG 2 cut(s) 6, 443
Bst4CI ACNGT 2 cut(s) 366, 487
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 3 cut(s) 39, 172, 360
BstMAI GTCTC 2 cut(s) 53, 411
BstMBI GATC 3 cut(s) 36, 169, 357
BstMWI GCNNNNNNNGC 3 cut(s) 86, 334, 560
BstNI CCWGG 2 cut(s) 6, 443
BstSCI CCNGG 2 cut(s) 4, 441
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 4 cut(s) 108, 382, 543, 585
BtsCI GGATG 1 cut(s) 360
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 492
BveI ACCTGC 2 cut(s) 412, 592
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 250, 367
CviAII CATG 1 cut(s) 322
CviQI GTAC 2 cut(s) 250, 367
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 38, 171, 359
DpnII GATC 3 cut(s) 36, 169, 357
EaeI YGGCCR 2 cut(s) 106, 583
Eco147I AGGCCT 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 3 cut(s) 197, 405, 433
Eco88I CYCGRG 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 4, 441
EcoT38I GRGCYC 1 cut(s) 576
FaeI CATG 1 cut(s) 325
FatI CATG 1 cut(s) 321
FauNDI CATATG 1 cut(s) 520
Fnu4HI GCNGC 5 cut(s) 78, 237, 380, 561, 586
FokI GGATG 1 cut(s) 367
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 5 cut(s) 78, 237, 380, 561, 586
FspBI CTAG 1 cut(s) 230
GluI GCNGC 5 cut(s) 78, 237, 380, 561, 586
GsuI CTGGAG 2 cut(s) 105, 540
HaeIII GGCC 4 cut(s) 108, 382, 543, 585
Hin1II CATG 1 cut(s) 325
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HpaI GTTAAC 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 411, 428
Hpy188III TCNNGA 4 cut(s) 84, 257, 479, 618
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 5 cut(s) 240, 380, 428, 500, 533
HpyCH4III ACNGT 2 cut(s) 366, 487
HpyCH4V TGCA 3 cut(s) 116, 236, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 334, 560
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 325
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 3 cut(s) 36, 169, 357
LmnI GCTCC 2 cut(s) 86, 559
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 4 cut(s) 89, 223, 288, 295
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 452
MalI GATC 3 cut(s) 38, 171, 359
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 36, 169, 357
MboII GAAGA 4 cut(s) 190, 439, 523, 539
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 576
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 4 cut(s) 110, 185, 397, 567
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 3 cut(s) 193, 318, 383
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 3 cut(s) 122, 242, 417
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 6, 443
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 6, 443
MwoI GCNNNNNNNGC 3 cut(s) 86, 334, 560
NdeI CATATG 1 cut(s) 520
NdeII GATC 3 cut(s) 36, 169, 357
NlaIII CATG 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 374
PaqCI CACCTGC 1 cut(s) 592
PceI AGGCCT 1 cut(s) 543
PctI GAATGC 1 cut(s) 556
PkrI GCNGC 5 cut(s) 79, 238, 381, 562, 587
Psp6I CCWGG 2 cut(s) 4, 441
PspGI CCWGG 2 cut(s) 4, 441
PspPI GGNCC 1 cut(s) 424
PspXI VCTCGAGB 1 cut(s) 374
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 2 cut(s) 251, 368
RsaNI GTAC 2 cut(s) 250, 367
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 3 cut(s) 122, 242, 417
SatI GCNGC 5 cut(s) 78, 237, 380, 561, 586
Sau3AI GATC 3 cut(s) 36, 169, 357
Sau96I GGNCC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 6, 443
SduI GDGCHC 1 cut(s) 576
SfaNI GCATC 4 cut(s) 89, 223, 288, 295
Sfr274I CTCGAG 1 cut(s) 374
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 2 cut(s) 374, 545
SmoI CTYRAG 2 cut(s) 374, 545
Sse9I AATT 4 cut(s) 110, 185, 397, 567
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 4 cut(s) 78, 379, 560, 586
SspMI CTAG 1 cut(s) 230
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 4, 441
TaaI ACNGT 2 cut(s) 366, 487
TaqI TCGA 1 cut(s) 375
TasI AATT 4 cut(s) 110, 185, 397, 567
TatI WGTACW 1 cut(s) 366
TauI GCSGC 4 cut(s) 80, 382, 563, 588
Tru1I TTAA 3 cut(s) 122, 242, 417
Tru9I TTAA 3 cut(s) 122, 242, 417
TscAI CASTG 2 cut(s) 315, 492
TseI GCWGC 1 cut(s) 236
TspRI CASTG 2 cut(s) 315, 492
VpaK11BI GGWCC 1 cut(s) 424
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 374
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.