Rh2CG005000

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000196
Physical Location & Seq
Forward (+)
439002 .. 439508
507 bp
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UTR
Exon/CDS
Intron
Rh2CG005000.1

Sequence Viewer

Length: 279 bp
ATGCCTGGACTGACTGCTTATGTAGGTTTTTATGAGGTTTGCTCACCTAAGAGAGGAGAGACGGTCTACATCTCAGCAGCATCTGGAGCAGTTGGTCAACTTGTTAGCCAATTTGCCAAACTCATGGGTTGCTATGTCATTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAACCTAACTTGGATGCAGCTCTAAAAAGGTACTTTCCTGAAGGTATTGATATTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

92

Amino Acids

10.07

Weight (kDa)

5.33

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 30 - 91 4.6e-13 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccI GTMKAC 1 cut(s) 66
AcuI CTGAAG 2 cut(s) 197, 279
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 77, 236
AsuHPI GGTGA 1 cut(s) 36
BbvI GCAGC 2 cut(s) 89, 248
BciT130I CCWGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 53
BisI GCNGC 2 cut(s) 78, 237
BlsI GCNGC 2 cut(s) 79, 238
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 89, 223
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 89, 248
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 48, 73
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 2 cut(s) 89, 248
BstXI CCANNNNNNTGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 124
CviJI RGCY 3 cut(s) 108, 203, 239
CviKI_1 RGCY 3 cut(s) 108, 203, 239
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 48, 73
Eco57I CTGAAG 2 cut(s) 197, 279
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 4
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 21, 33, 125, 135, 213
FatI CATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 78, 237
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 78, 237
GluI GCNGC 2 cut(s) 78, 237
GsuI CTGGAG 1 cut(s) 105
Hin1II CATG 1 cut(s) 127
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 67, 98
Hpy188III TCNNGA 2 cut(s) 84, 257
Hpy8I GTNNAC 2 cut(s) 67, 98
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 48, 73
Hsp92II CATG 1 cut(s) 127
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 18, 69, 135, 270
Lsp1109I GCAGC 2 cut(s) 89, 248
LweI GCATC 2 cut(s) 89, 223
MboII GAAGA 2 cut(s) 190, 230
MluCI AATT 2 cut(s) 110, 208
MnlI CCTC 3 cut(s) 28, 47, 193
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 127
PkrI GCNGC 2 cut(s) 79, 238
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SatI GCNGC 2 cut(s) 78, 237
ScrFI CCNGG 1 cut(s) 6
SetI ASST 8 cut(s) 28, 39, 49, 168, 226, 241, 251, 265
SfaNI GCATC 2 cut(s) 89, 223
Sse9I AATT 2 cut(s) 110, 208
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 64
TasI AATT 2 cut(s) 110, 208
TseI GCWGC 2 cut(s) 77, 236
XagI CCTNNNNNAGG 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.