Rroxscaffold_3G00273850

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000196
Physical Location & Seq
Reverse (-)
65569569 .. 65580674
11106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273850.1

Sequence Viewer

Length: 672 bp
ATGCCCTTTTCTGCAGAAAAGACAGTACTTTGTGTTATCAATTTTTCATCCAAATTTGATTCCGAACTCTTTGCACCGGTACGTAGTATTGCAATTTTTCGGTGGGTCACACATGGATTTTGTAGATCGATGGCTCTATTTTTTCTTGCTGAAAATTGTGCTAGCTTAGGTATCTCATCCGGTATTGTGGAAGCTGTATATATCACCGGCTTCCCCAAAGAATCCAACCTCAAATTGACCACCGCCACTACCAAACTCAAGCTTCCGGAAGGTTTAACCGGCCTCTTCGTCAAGAACCTCTACTTGTCCCGCGATCCTTACATGCGAAGCCGGCCATTCAAATGGAGAAGAAAACCAATCTATGTTGTTCCAAATGGCTACCCAACTCCGTACCGCCTATCTATAGAGGATAGATGGAGCAAGAGAGAGACAAGGCTTCGGGGTCGGGGTGTTACAAATGGTATCGAGCTTAGGTTCATACCTCGGACCGGGAAGATGGGTACTACAGAGTTGACTAAAGTTTTGAAAGAATATTGGATGACCAAGCCTGTAATTGGTTTGGGAGTGGCTAAAGTCCCGGAATCTGGGATCCAAAGTTTAAGCCGGGGGACTTGGTTTGGGGTCACACCGGTTGGGAAGAATATAGTGTCATCACCACAGAGTCTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

223

Amino Acids

25.1

Weight (kDa)

10.11

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 3 cut(s) 243, 310, 394
AclWI GGATC 3 cut(s) 308, 583, 596
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 4 cut(s) 27, 81, 392, 502
AfiI CCNNNNNNNGG 3 cut(s) 488, 554, 584
AgeI ACCGGT 2 cut(s) 76, 628
AgsI TTSAA 2 cut(s) 340, 526
AluBI AGCT 4 cut(s) 165, 194, 262, 469
AluI AGCT 4 cut(s) 165, 194, 262, 469
Alw26I GTCTC 2 cut(s) 422, 668
AlwI GGATC 3 cut(s) 308, 583, 596
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 2 cut(s) 280, 332
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AsiGI ACCGGT 2 cut(s) 76, 628
AspS9I GGNCC 1 cut(s) 486
AsuC2I CCSGG 3 cut(s) 490, 578, 605
AsuHPI GGTGA 2 cut(s) 196, 645
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 486
BamHI GGATCC 1 cut(s) 588
BccI CCATC 3 cut(s) 124, 408, 490
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BcnI CCSGG 3 cut(s) 490, 578, 605
BcoDI GTCTC 2 cut(s) 422, 668
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 3 cut(s) 12, 402, 504
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 490, 578, 605
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 3 cut(s) 490, 578, 605
BmtI GCTAGC 1 cut(s) 165
Bpu10I CCTNAGC 2 cut(s) 166, 470
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 3 cut(s) 490, 578, 605
Bsa29I ATCGAT 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 482, 604
BsaWI WCCGGW 4 cut(s) 76, 179, 265, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 488, 554, 584
Bse118I RCCGGY 5 cut(s) 76, 206, 278, 330, 628
BseAI TCCGGA 1 cut(s) 265
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 482, 604
BseGI GGATG 3 cut(s) 47, 176, 543
BseLI CCNNNNNNNGG 3 cut(s) 488, 554, 584
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 282, 334
BshTI ACCGGT 2 cut(s) 76, 628
BshVI ATCGAT 1 cut(s) 128
BslFI GGGAC 3 cut(s) 292, 560, 622
BslI CCNNNNNNNGG 3 cut(s) 488, 554, 584
BsmAI GTCTC 2 cut(s) 422, 668
BsmFI GGGAC 3 cut(s) 292, 560, 622
BsnI GGCC 2 cut(s) 282, 334
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 3 cut(s) 125, 313, 588
BspACI CCGC 3 cut(s) 243, 310, 394
BspANI GGCC 2 cut(s) 282, 334
BspDI ATCGAT 1 cut(s) 128
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 3 cut(s) 308, 583, 596
BsrFI RCCGGY 5 cut(s) 76, 206, 278, 330, 628
BssAI RCCGGY 5 cut(s) 76, 206, 278, 330, 628
BssECI CCNNGG 2 cut(s) 482, 604
BssMI GATC 3 cut(s) 125, 313, 588
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 163, 332
BstDEI CTNAG 2 cut(s) 166, 470
BstF5I GGATG 3 cut(s) 47, 176, 543
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 3 cut(s) 128, 316, 591
BstMAI GTCTC 2 cut(s) 422, 668
BstMBI GATC 3 cut(s) 125, 313, 588
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 3 cut(s) 488, 576, 603
BstSFI CTRYAG 3 cut(s) 12, 402, 504
BstSNI TACGTA 1 cut(s) 83
BstUI CGCG 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 588
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 1 cut(s) 588
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 2 cut(s) 282, 334
BsuTUI ATCGAT 1 cut(s) 128
BtsCI GGATG 3 cut(s) 47, 176, 543
Cac8I GCNNGC 2 cut(s) 163, 332
Cfr10I RCCGGY 5 cut(s) 76, 206, 278, 330, 628
Cfr13I GGNCC 1 cut(s) 486
ClaI ATCGAT 1 cut(s) 128
CpoI CGGWCCG 1 cut(s) 486
Csp6I GTAC 4 cut(s) 26, 80, 391, 501
CspAI ACCGGT 2 cut(s) 76, 628
CspI CGGWCCG 1 cut(s) 486
CviAII CATG 2 cut(s) 113, 322
CviQI GTAC 4 cut(s) 26, 80, 391, 501
DdeI CTNAG 2 cut(s) 166, 470
DpnI GATC 3 cut(s) 127, 315, 590
DpnII GATC 3 cut(s) 125, 313, 588
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco105I TACGTA 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 486
FaeI CATG 2 cut(s) 116, 325
FaiI YATR 8 cut(s) 114, 199, 201, 323, 363, 404, 479, 644
FaqI GGGAC 3 cut(s) 292, 560, 622
FatI CATG 2 cut(s) 112, 321
FauI CCCGC 1 cut(s) 317
FokI GGATG 3 cut(s) 34, 163, 550
FspBI CTAG 1 cut(s) 162
HaeIII GGCC 2 cut(s) 282, 334
Hin1II CATG 2 cut(s) 116, 325
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 4 cut(s) 59, 221, 581, 661
HphI GGTGA 2 cut(s) 196, 645
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 2 cut(s) 64, 486
Hpy188III TCNNGA 3 cut(s) 266, 292, 665
Hpy8I GTNNAC 1 cut(s) 513
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 14, 74, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 166, 470
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 2 cut(s) 116, 325
Kpn2I TCCGGA 1 cut(s) 265
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
Kzo9I GATC 3 cut(s) 125, 313, 588
LmnI GCTCC 1 cut(s) 417
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 106, 451, 622
MalI GATC 3 cut(s) 127, 315, 590
MboI GATC 3 cut(s) 125, 313, 588
MboII GAAGA 4 cut(s) 277, 360, 505, 649
MflI RGATCY 1 cut(s) 588
MluCI AATT 6 cut(s) 40, 53, 93, 154, 233, 552
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 239, 293, 308, 400, 492
MroI TCCGGA 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 330
MseI TTAA 3 cut(s) 275, 599, 670
MslI CAYNNNNRTG 1 cut(s) 340
MspR9I CCNGG 3 cut(s) 490, 578, 605
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 331
NaeI GCCGGC 1 cut(s) 332
NciI CCSGG 3 cut(s) 490, 578, 605
NdeII GATC 3 cut(s) 125, 313, 588
NgoMIV GCCGGC 1 cut(s) 330
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 116, 325
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 2 cut(s) 106, 622
NspI RCATGY 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 332
PfeI GAWTC 3 cut(s) 59, 221, 581
PfoI TCCNGGA 1 cut(s) 576
PinAI ACCGGT 2 cut(s) 76, 628
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
Ppu21I YACGTR 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 1 cut(s) 486
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 588
RsaI GTAC 4 cut(s) 27, 81, 392, 502
RsaNI GTAC 4 cut(s) 26, 80, 391, 501
RseI CAYNNNNRTG 1 cut(s) 340
Rsr2I CGGWCCG 1 cut(s) 486
RsrII CGGWCCG 1 cut(s) 486
SaqAI TTAA 3 cut(s) 275, 599, 670
Sau3AI GATC 3 cut(s) 125, 313, 588
Sau96I GGNCC 1 cut(s) 486
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 3 cut(s) 490, 578, 605
SfcI CTRYAG 3 cut(s) 12, 402, 504
SinI GGWCC 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SnaBI TACGTA 1 cut(s) 83
Sse9I AATT 6 cut(s) 40, 53, 93, 154, 233, 552
SsiI CCGC 3 cut(s) 243, 310, 394
SspI AATATT 1 cut(s) 533
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 488, 576, 603
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 128, 465, 666
TasI AATT 6 cut(s) 40, 53, 93, 154, 233, 552
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 3 cut(s) 59, 221, 581
Tru1I TTAA 3 cut(s) 275, 599, 670
Tru9I TTAA 3 cut(s) 275, 599, 670
TseFI GTSAC 2 cut(s) 106, 622
Tsp45I GTSAC 2 cut(s) 106, 622
TspDTI ATGAA 2 cut(s) 36, 466
TspGWI ACGGA 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.