Rorug01G0455900

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000196
Physical Location & Seq
Reverse (-)
55013148 .. 55013921
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0455900.1

Sequence Viewer

Length: 774 bp
ATGGGTTTGGCCTTAAGCCAGATCATCTGGTCAAATTTTCAAGCCTATGAGCAACTCCAAACCCCTATAAAAAAAGAAGCAACCACTATCATCAACCTCAGCAAAAATGGCCACGTCTCCTATTCCCTTGTCCTAATCTCATTTCTGGTCCTAATCCAACCCTCTCACGGTGGTGGCATAGCCATCTATTGGGGGCAAAACGGGAACGAAGGAACCCTAAAGCAAACGTGCGCCACCGGAAAATACAAGTACGTGAACATAGCCTTCCTCAACGTCTTCGGCAGCGGCCAAACACCACAAATCAACCTAGCAGGCCACTGCAACCCAGCCTCGAATGGTTGTGCCGCTGTTGGCCCCGAAGTCACATTCTGCCAGAGCCTAGGAGTCAAGGTGTTCCTCTCCCTCGGCGGCGGCATCGGAAACTACTCTTTATCTTCTGCTTCTGATGCAAATTATGTAGCCAATTACCTCTGGAATAGTTTCCTGGGCGGAAAAGGAAAAGGCACAGACAAATCTACTACTACACGTCCCTTCGGCGACGCCGTTTTGGACGGGATAGATTTCGACATAGAGCAAGGTGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCAAACCAAGAAGAGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCCGATGCGTTCGTCGGCGGTGCGATTAGTACGGGGCTTTTCGACTATGTTTGGGTTCAGTTCTACAACAATCCTCCATGCCAGTATAGCCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

257

Amino Acids

27.75

Weight (kDa)

7.57

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 60 - 248 7.7e-15 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 6 cut(s) 285, 345, 408, 411, 489, 693
AcoI YGGCCR 2 cut(s) 109, 286
AcsI RAATTY 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 3 cut(s) 251, 647, 706
AfiI CCNNNNNNNGG 2 cut(s) 167, 189
AflII CTTAAG 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 1 cut(s) 41
AjiI CACGTC 2 cut(s) 115, 527
AjnI CCWGG 1 cut(s) 483
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 3 cut(s) 641, 653, 659
AluI AGCT 3 cut(s) 641, 653, 659
Alw26I GTCTC 1 cut(s) 121
AoxI GGCC 5 cut(s) 9, 109, 286, 313, 352
ApeKI GCWGC 3 cut(s) 282, 653, 656
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 479
AspA2I CCTAGG 1 cut(s) 379
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 148, 353
AvaII GGWCC 1 cut(s) 148
AvrII CCTAGG 1 cut(s) 379
BalI TGGCCA 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 294, 640, 668
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 308, 380, 772
BfmI CTRYAG 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 7 cut(s) 283, 286, 345, 409, 412, 654, 657
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 7 cut(s) 284, 287, 346, 410, 413, 655, 658
Bme1390I CCNGG 1 cut(s) 485
Bme18I GGWCC 1 cut(s) 148
BmgBI CACGTC 2 cut(s) 115, 527
BmgT120I GGNCC 2 cut(s) 148, 353
BmiI GGNNCC 2 cut(s) 214, 355
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 3 cut(s) 423, 436, 670
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 599
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 379, 403, 484
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 189
Bse1I ACTGG 1 cut(s) 757
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 3 cut(s) 379, 403, 484
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 167, 189
BseMII CTCAG 2 cut(s) 112, 677
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 3 cut(s) 294, 640, 668
BseYI CCCAGC 1 cut(s) 325
BshFI GGCC 5 cut(s) 11, 111, 288, 315, 354
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 2 cut(s) 167, 189
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 5 cut(s) 11, 111, 288, 315, 354
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 6 cut(s) 285, 345, 408, 411, 489, 693
BspANI GGCC 5 cut(s) 11, 111, 288, 315, 354
BspCNI CTCAG 2 cut(s) 111, 676
BspLI GGNNCC 2 cut(s) 214, 355
BspMAI CTGCAG 1 cut(s) 658
BspQI GCTCTTC 1 cut(s) 631
BspTI CTTAAG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 757
BssECI CCNNGG 3 cut(s) 379, 403, 484
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 631
BstACI GRCGYC 1 cut(s) 540
BstAFI CTTAAG 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 3 cut(s) 98, 649, 663
BstF5I GGATG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 108, 446, 762
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 294, 640, 668
BstV2I GAAGAC 1 cut(s) 268
BsuRI GGCC 5 cut(s) 11, 111, 288, 315, 354
BtrI CACGTC 2 cut(s) 115, 527
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 316, 671
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 148, 353
CseI GACGC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 250, 646, 705
CviAII CATG 1 cut(s) 753
CviQI GTAC 3 cut(s) 250, 646, 705
DdeI CTNAG 3 cut(s) 98, 649, 663
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 2 cut(s) 109, 286
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
EciI GGCGGA 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 756
FaqI GGGAC 1 cut(s) 513
FatI CATG 1 cut(s) 752
Fnu4HI GCNGC 7 cut(s) 283, 286, 345, 409, 412, 654, 657
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 7 cut(s) 283, 286, 345, 409, 412, 654, 657
FspBI CTAG 3 cut(s) 308, 380, 772
GlaI GCGC 1 cut(s) 232
GluI GCNGC 7 cut(s) 283, 286, 345, 409, 412, 654, 657
GsaI CCCAGC 1 cut(s) 329
HaeIII GGCC 5 cut(s) 11, 111, 288, 315, 354
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 1 cut(s) 756
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 1 cut(s) 384
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 256, 646
Hpy188I TCNGA 2 cut(s) 419, 445
Hpy188III TCNNGA 2 cut(s) 472, 677
Hpy8I GTNNAC 2 cut(s) 256, 646
Hpy99I CGWCG 2 cut(s) 542, 692
HpyAV CCTTC 3 cut(s) 203, 274, 541
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 6 cut(s) 114, 227, 252, 273, 526, 607
HpyCH4V TGCA 5 cut(s) 321, 449, 581, 605, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 446, 762
HpyF3I CTNAG 3 cut(s) 98, 649, 663
HpySE526I ACGT 6 cut(s) 114, 227, 252, 273, 526, 607
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 1 cut(s) 756
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 631
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 3 cut(s) 294, 640, 668
LweI GCATC 3 cut(s) 423, 436, 670
MaeI CTAG 3 cut(s) 308, 380, 772
MaeII ACGT 6 cut(s) 114, 227, 252, 273, 526, 607
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 268, 426, 648
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 3 cut(s) 34, 451, 463
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 9 cut(s) 107, 172, 278, 340, 407, 413, 479, 672, 759
Mox20I TGGCCA 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 111
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 285, 347
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 3 cut(s) 108, 446, 762
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 756
NlaIV GGNNCC 2 cut(s) 214, 355
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 361
OliI CACNNNNGTG 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 479
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 7 cut(s) 284, 287, 346, 410, 413, 655, 658
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 214, 355
PspPI GGNCC 2 cut(s) 148, 353
PstI CTGCAG 1 cut(s) 658
RsaI GTAC 3 cut(s) 251, 647, 706
RsaNI GTAC 3 cut(s) 250, 646, 705
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 631
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 7 cut(s) 283, 286, 345, 409, 412, 654, 657
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 2 cut(s) 148, 353
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 485
SfaNI GCATC 3 cut(s) 423, 436, 670
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 13, 614
SmoI CTYRAG 2 cut(s) 13, 614
Sse9I AATT 3 cut(s) 34, 451, 463
SsiI CCGC 6 cut(s) 285, 345, 408, 411, 489, 693
SspMI CTAG 3 cut(s) 308, 380, 772
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 6 cut(s) 117, 230, 255, 276, 529, 610
TaqI TCGA 3 cut(s) 332, 564, 717
TasI AATT 3 cut(s) 34, 451, 463
TatI WGTACW 1 cut(s) 645
TauI GCSGC 4 cut(s) 288, 347, 411, 414
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 2 cut(s) 323, 671
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 3 cut(s) 282, 653, 656
Tsp45I GTSAC 1 cut(s) 361
TspRI CASTG 2 cut(s) 323, 671
Van91I CCANNNNNTGG 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 3 cut(s) 308, 380, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.