Rh2DG004500

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000196
Physical Location & Seq
Forward (+)
288590 .. 289994
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG004500.1

Sequence Viewer

Length: 279 bp
ATGGATGACATAGGCGACTACCTCATCTCTACTAGAAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAACCTAACTTGGATGCAGCTCTAAAAAGGTACTTTCCTGAAGGTATTGATATTTACTATGAAAATGTTGGGGGAAAGATGCTGGATGCAGTGCTACCAAACATGAAGTTCGGGGGGCGAATTGCAGTTTGTGGGATGATATCCCAATATAACCTTGAGAAGCCTGAAGGTGTACACAATCTAATGCATGTTCCTTGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

92

Amino Acids

10.45

Weight (kDa)

4.82

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 14 - 74 3.9e-11 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AcuI CTGAAG 2 cut(s) 135, 261
AfaI GTAC 2 cut(s) 107, 249
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 104
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmsI GCATC 3 cut(s) 79, 144, 151
BpuEI CTTGAG 1 cut(s) 251
BseGI GGATG 4 cut(s) 10, 94, 166, 216
BseXI GCAGC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 247
BstF5I GGATG 4 cut(s) 10, 94, 166, 216
BstNSI RCATGY 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 104
BtsCI GGATG 4 cut(s) 10, 94, 166, 216
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Csp6I GTAC 2 cut(s) 106, 248
CviAII CATG 2 cut(s) 178, 263
CviJI RGCY 3 cut(s) 59, 95, 238
CviKI_1 RGCY 3 cut(s) 59, 95, 238
CviQI GTAC 2 cut(s) 106, 248
Eco32I GATATC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 135, 261
EcoRV GATATC 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 2 cut(s) 181, 266
FaiI YATR 7 cut(s) 11, 69, 135, 179, 225, 264, 277
FatI CATG 2 cut(s) 177, 262
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 4 cut(s) 17, 101, 173, 223
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 181, 266
Hpy166II GTNNAC 2 cut(s) 248, 250
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 248, 250
HpyAV CCTTC 2 cut(s) 110, 236
HpyCH4V TGCA 4 cut(s) 92, 164, 200, 262
Hsp92II CATG 2 cut(s) 181, 266
LpnPI CCDG 3 cut(s) 126, 143, 252
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 3 cut(s) 79, 144, 151
MaeI CTAG 1 cut(s) 33
MboII GAAGA 1 cut(s) 86
MluCI AATT 2 cut(s) 64, 195
MnlI CCTC 2 cut(s) 32, 49
Mph1103I ATGCAT 1 cut(s) 264
NlaIII CATG 2 cut(s) 181, 266
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 266
PkrI GCNGC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 69
RsaI GTAC 2 cut(s) 107, 249
RsaNI GTAC 2 cut(s) 106, 248
SatI GCNGC 1 cut(s) 93
SetI ASST 7 cut(s) 24, 82, 97, 107, 121, 231, 247
SfaNI GCATC 3 cut(s) 79, 144, 151
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 64, 195
SspMI CTAG 1 cut(s) 33
TasI AATT 2 cut(s) 64, 195
TatI WGTACW 1 cut(s) 247
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 150, 194
TspRI CASTG 1 cut(s) 171
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.