Rmu_sc0008883.1_g000001

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008883.1
OG0000196
Physical Location & Seq
Forward (+)
92 .. 2012
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008883.1_g000001.1.cds

Sequence Viewer

Length: 732 bp
atggcgactccctctgaagtgatcagcaacaagcaggtgatactgagagactatgtcaccggcttccccaaagaatccgacatggaattgcgcacggccacaaccacactgaagctgccacaaggttccaccggggttctcgtcaagaatctctacttgtcctgcgatccttacatgaaaaaccgcatgaccaaacgtgaaactgcctcttatgtcgaaactttccatcccggttcccctataaccggatttggagtggctaaagttttagagtctggggatgcaaagtttgagcagggcgacttgatttgggggattaccggctgggaagagtacagtctcatcactgcaacacagtctctctttaagattcaccacgaccccaatattcctctctcttattatactggaattctcggtatgcctggaattactgcttatgctggtctttatgagctttgctcacctaagaaaggagagacggtctatgtttcagcagcatctggagcagtaggtcaactagttggccagtttgccaaactcatgggttgctatgttgttggaagtgctggaagtaaagaaaaggttgatttgctgaagaacaagtttgggtttgacgaggctttcaattataaagaagaatctaacttggatgcagctttgaaaaggttaatattctttacagatatacatactggacttcccacattgtcggtgttttcttacaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

243

Amino Acids

26.63

Weight (kDa)

6.11

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AarI CACCTGC 1 cut(s) 25
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 25
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 2 cut(s) 96, 526
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 3 cut(s) 36, 131, 617
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 245, 473
AgsI TTSAA 2 cut(s) 628, 664
AhlI ACTAGT 1 cut(s) 520
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 3 cut(s) 115, 457, 659
AluI AGCT 3 cut(s) 115, 457, 659
Alw26I GTCTC 4 cut(s) 42, 344, 363, 473
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 2 cut(s) 96, 526
ApeKI GCWGC 3 cut(s) 115, 497, 656
ApoI RAATTY 1 cut(s) 411
AspLEI GCGC 1 cut(s) 93
AsuC2I CCSGG 2 cut(s) 133, 231
AsuHPI GGTGA 4 cut(s) 49, 49, 365, 456
BalI TGGCCA 1 cut(s) 528
BbvI GCAGC 3 cut(s) 102, 509, 668
BccI CCATC 1 cut(s) 234
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 426
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 2 cut(s) 133, 231
BcoDI GTCTC 4 cut(s) 42, 344, 363, 473
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 2 cut(s) 521, 730
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 3 cut(s) 116, 498, 657
BlsI GCNGC 3 cut(s) 117, 499, 658
Bme1390I CCNGG 3 cut(s) 133, 231, 426
BmiI GGNNCC 2 cut(s) 127, 235
BmrFI CCNGG 3 cut(s) 133, 231, 426
BmsI GCATC 3 cut(s) 271, 509, 643
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 1 cut(s) 525
BpuMI CCSGG 2 cut(s) 133, 231
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 473
Bse118I RCCGGY 2 cut(s) 59, 320
Bse1I ACTGG 3 cut(s) 412, 529, 700
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 226, 286, 658
BseLI CCNNNNNNNGG 2 cut(s) 245, 473
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 3 cut(s) 412, 529, 700
BseXI GCAGC 3 cut(s) 102, 509, 668
BseYI CCCAGC 1 cut(s) 324
BshFI GGCC 2 cut(s) 98, 528
BsiSI CCGG 5 cut(s) 60, 132, 231, 246, 321
BslI CCNNNNNNNGG 2 cut(s) 245, 473
BsmAI GTCTC 4 cut(s) 42, 344, 363, 473
BsmBI CGTCTC 1 cut(s) 473
BsnI GGCC 2 cut(s) 98, 528
Bsp143I GATC 2 cut(s) 21, 166
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 98, 528
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 127, 235
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 161
BsrFI RCCGGY 2 cut(s) 59, 320
BsrI ACTGG 3 cut(s) 412, 529, 700
BssAI RCCGGY 2 cut(s) 59, 320
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 21, 166
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 3 cut(s) 338, 357, 484
Bst6I CTCTTC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 44, 468
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 226, 286, 658
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 24, 169
BstMAI GTCTC 4 cut(s) 42, 344, 363, 473
BstMBI GATC 2 cut(s) 21, 166
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 3 cut(s) 131, 229, 424
BstV1I GCAGC 3 cut(s) 102, 509, 668
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 2 cut(s) 98, 528
BtsCI GGATG 3 cut(s) 226, 286, 658
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 107, 345
BveI ACCTGC 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 2 cut(s) 59, 320
Csp6I GTAC 1 cut(s) 334
CviAII CATG 4 cut(s) 82, 175, 187, 544
CviJI RGCY 9 cut(s) 63, 98, 115, 260, 324, 457, 528, 623, 659
CviKI_1 RGCY 9 cut(s) 63, 98, 115, 260, 324, 457, 528, 623, 659
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 44, 468
DpnI GATC 2 cut(s) 23, 168
DpnII GATC 2 cut(s) 21, 166
EaeI YGGCCR 2 cut(s) 96, 526
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco57I CTGAAG 3 cut(s) 36, 131, 617
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 4 cut(s) 85, 178, 190, 547
FatI CATG 4 cut(s) 81, 174, 186, 543
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 116, 498, 657
FokI GGATG 3 cut(s) 213, 293, 665
Fsp4HI GCNGC 3 cut(s) 116, 498, 657
FspBI CTAG 2 cut(s) 521, 730
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 116, 498, 657
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 2 cut(s) 98, 528
HapII CCGG 5 cut(s) 60, 132, 231, 246, 321
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 85, 178, 190, 547
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 518
HindII GTYRAC 1 cut(s) 518
HinfI GANTC 6 cut(s) 7, 74, 148, 272, 370, 641
HpaII CCGG 5 cut(s) 60, 132, 231, 246, 321
HphI GGTGA 4 cut(s) 49, 49, 365, 456
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 2 cut(s) 16, 79
Hpy188III TCNNGA 2 cut(s) 145, 504
Hpy8I GTNNAC 1 cut(s) 518
HpyCH4III ACNGT 3 cut(s) 338, 357, 484
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 284, 350, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 2 cut(s) 44, 468
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 4 cut(s) 85, 178, 190, 547
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 166
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 3 cut(s) 102, 509, 668
LweI GCATC 3 cut(s) 271, 509, 643
MaeI CTAG 2 cut(s) 521, 730
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 23, 168
MboI GATC 2 cut(s) 21, 166
MboII GAAGA 3 cut(s) 341, 610, 650
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 4 cut(s) 86, 411, 429, 628
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 102, 541
MnlI CCTC 4 cut(s) 22, 217, 402, 613
Mox20I TGGCCA 1 cut(s) 528
MscI TGGCCA 1 cut(s) 528
MseI TTAA 2 cut(s) 366, 671
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 5 cut(s) 60, 132, 231, 246, 321
MspR9I CCNGG 3 cut(s) 133, 231, 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 2 cut(s) 133, 231
NdeII GATC 2 cut(s) 21, 166
NlaIII CATG 4 cut(s) 85, 178, 190, 547
NlaIV GGNNCC 2 cut(s) 127, 235
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 92
PaqCI CACCTGC 1 cut(s) 25
PfeI GAWTC 4 cut(s) 74, 148, 370, 641
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 117, 499, 658
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PsiI TTATAA 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 127, 235
PstNI CAGNNNCTG 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 366, 671
SatI GCNGC 3 cut(s) 116, 498, 657
Sau3AI GATC 2 cut(s) 21, 166
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 133, 231, 426
SfaNI GCATC 3 cut(s) 271, 509, 643
SpeI ACTAGT 1 cut(s) 520
Sse9I AATT 4 cut(s) 86, 411, 429, 628
SsiI CCGC 1 cut(s) 184
SspI AATATT 2 cut(s) 388, 675
SspMI CTAG 2 cut(s) 521, 730
StyD4I CCNGG 3 cut(s) 131, 229, 424
TaaI ACNGT 3 cut(s) 338, 357, 484
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 216
TasI AATT 4 cut(s) 86, 411, 429, 628
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 4 cut(s) 74, 148, 370, 641
Tru1I TTAA 2 cut(s) 366, 671
Tru9I TTAA 2 cut(s) 366, 671
TscAI CASTG 2 cut(s) 114, 352
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 115, 497, 656
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 2 cut(s) 114, 352
Tth111I GACNNNGTC 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 411
XspI CTAG 2 cut(s) 521, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.