RchiOBHm_Chr1g0325351

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000196
Physical Location & Seq
Reverse (-)
13295414 .. 13296070
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55508

Sequence Viewer

Length: 228 bp
ATGTCGAAACTTTCCACCCCGGTTCCGTCGACACCTGTAACCGAATTTGGAGTGGCTAAAGTTTTGGAGTCTGGGGATGCAAAGTTTGAGCAGGGCGACTTGATTTGGAGGATTACTGGCCGGGAAGAGTACAGTCTCATCACTGCAACACACTCTCTATTTAAGATTCACCACGACCCCAATATTCCTCTCTCTTATCATACCGGAATTCTCGATGCCGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

75

Amino Acids

8.31

Weight (kDa)

5.69

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 2 cut(s) 44, 207
AfaI GTAC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 44, 207
AsuC2I CCSGG 2 cut(s) 20, 122
AsuHPI GGTGA 1 cut(s) 161
BcnI CCSGG 2 cut(s) 20, 122
BcoDI GTCTC 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 20, 122
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 20, 122
BmsI GCATC 2 cut(s) 67, 205
BpuMI CCSGG 2 cut(s) 20, 122
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 121
BshFI GGCC 1 cut(s) 120
BsiSI CCGG 3 cut(s) 20, 121, 204
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 120
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 120
BstF5I GGATG 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 18, 120
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 2 cut(s) 56, 120
CviKI_1 RGCY 2 cut(s) 56, 120
CviQI GTAC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 207
FaiI YATR 1 cut(s) 201
FblI GTMKAC 1 cut(s) 29
FokI GGATG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 120
HapII CCGG 3 cut(s) 20, 121, 204
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 68, 166
HpaII CCGG 3 cut(s) 20, 121, 204
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 80, 146
LpnPI CCDG 7 cut(s) 33, 48, 57, 77, 102, 134, 217
LweI GCATC 2 cut(s) 67, 205
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 1 cut(s) 137
MluCI AATT 2 cut(s) 44, 207
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 2 cut(s) 102, 198
MseI TTAA 1 cut(s) 162
MspI CCGG 3 cut(s) 20, 121, 204
MspR9I CCNGG 2 cut(s) 20, 122
NciI CCSGG 2 cut(s) 20, 122
NlaIV GGNNCC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 166
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 162
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 20, 122
SetI ASST 1 cut(s) 37
SfaNI GCATC 2 cut(s) 67, 205
Sse9I AATT 2 cut(s) 44, 207
SspI AATATT 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 18, 120
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 5, 29, 213
TasI AATT 2 cut(s) 44, 207
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 148
XapI RAATTY 2 cut(s) 44, 207
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.