Rh2CG005100

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000196
Physical Location & Seq
Forward (+)
439534 .. 440108
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG005100.1

Sequence Viewer

Length: 330 bp
ATGCTGGATGCAGTGCTACCAAACATGAAGTTCGGGGGACGAATTGCAGTTTGTGGGATGATATCCCAATATAACCTTGAGAAGCCTGAAGGTGTACACAATCTAATGTTCCTTGTTTATAGAGAGGTCCGGATGCAAGGTTTTGCTGTTTTGAATTACTATCATCTTTACGAGAAGTTTCTTGAAACGGTTCTGCTTGACATAAAAAAAGGGAAGATTACATATGTGGAAGATGTAGTTGAAGGCCTCGAAAGTGCTCCATCGGCCCTGATTGGACTCTTTACAGGTCGCAATGTCGGAAAGCAGGTTGTCGTTGTTTCCCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

6.73

Isoelectric Point (pI)

21.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccIII TCCGGA 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 96
AgsI TTSAA 3 cut(s) 154, 185, 242
Alw21I GWGCWC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 2 cut(s) 244, 264
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 127, 265
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 127, 265
BmsI GCATC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 298
BseAI TCCGGA 1 cut(s) 129
BseGI GGATG 3 cut(s) 13, 63, 138
BseMI GCAATG 1 cut(s) 298
BshFI GGCC 2 cut(s) 246, 266
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 2 cut(s) 246, 266
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 259
Bsp13I TCCGGA 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 94
BspANI GGCC 2 cut(s) 246, 266
BspEI TCCGGA 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 94
BstF5I GGATG 3 cut(s) 13, 63, 138
BstMWI GCNNNNNNNGC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 246, 266
BtsCI GGATG 3 cut(s) 13, 63, 138
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 127, 265
Csp6I GTAC 1 cut(s) 95
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 85, 246, 266
CviKI_1 RGCY 3 cut(s) 85, 246, 266
CviQI GTAC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 246
Eco32I GATATC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 321
EcoRV GATATC 1 cut(s) 63
FaeI CATG 1 cut(s) 28
FaiI YATR 6 cut(s) 26, 72, 120, 203, 223, 225
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 24
FauNDI CATATG 1 cut(s) 223
FokI GGATG 3 cut(s) 20, 70, 145
HaeIII GGCC 2 cut(s) 246, 266
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 276
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 95, 97
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 3 cut(s) 130, 182, 321
Hpy8I GTNNAC 2 cut(s) 95, 97
HpyAV CCTTC 2 cut(s) 83, 236
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 3 cut(s) 11, 47, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 129
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 99, 143, 270, 281, 290
LweI GCATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 226, 242
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 2 cut(s) 42, 154
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 2 cut(s) 118, 257
MroI TCCGGA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 189
MspI CCGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeI CATATG 1 cut(s) 223
NlaIII CATG 1 cut(s) 28
PceI AGGCCT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 189
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 127, 265
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
Sau96I GGNCC 2 cut(s) 127, 265
SchI GAGTC 1 cut(s) 270
SduI GDGCHC 1 cut(s) 259
SetI ASST 6 cut(s) 78, 94, 129, 142, 289, 309
SfaNI GCATC 1 cut(s) 123
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 42, 154
SseBI AGGCCT 1 cut(s) 246
StuI AGGCCT 1 cut(s) 246
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 42, 154
TatI WGTACW 1 cut(s) 94
TscAI CASTG 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.