Rh6DG203800

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000196
Physical Location & Seq
Reverse (-)
36228147 .. 36229662
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG203800.1

Sequence Viewer

Length: 717 bp
ATGTACTTGAACACGTCTATCATTAAGCTCAAAGTGCCTGCAGGAGAAGACTTCAAAGGATCGGTGCTGTTGAAGAACCTCTACCTCTCCTGCGATCTCTACATGCAAGACGTTAAGCATAGTGATTCCTCCACTACCAAACAAGACCGCATTGTCTTCTTCTCCCCTGACTCTCCAATAGTGGGCTATGGAGTATCAAAAGCTGTGGATTCTCATCAACCAGAGTTCAAGGCAGGGGACTTGATTACTTTATCAGTTTGGGGTATAACAAAGTGGGAGGAGTATACTCTCATCACTAAGACGAAAAGGTTGTTCAAAATCAACCACACTGATGTACCCCTTTCCTACTACACTGGACTTCTCATTAATATGACTGCTTATGCTAATTTCTATGAAGTCTGCAATCCAAAGAAAGGAGAGTATGTGTACATTTCCTCAGCATTCGGGGGTGTTGGTCAGATTGTTGGCCAATTTGCCAAACTTATGGGTTGTTATGTTGTTGGAAGTGCTGGCAGTCAGGAAAAGGTTGACATACTGAAGAACAAGTTTGGATTTGATGAGGCATTCAATTACAAGGAAGAGCCCGACTTGGATGCTGCTTTGAAGAGGTACTTCCCAAAGGGCATAGATATTTACTTCGAGAATGCTGGAGGCAAAATGCTGGATGCAGTGCTGCTCAACATGAGACTTCACAGCCGATTGCCGTGTGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

238

Amino Acids

26.67

Weight (kDa)

7.61

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 19 - 106 1.4e-09 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 150 - 234 1.9e-17 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 284
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 557
AfaI GTAC 4 cut(s) 5, 336, 428, 611
AfiI CCNNNNNNNGG 2 cut(s) 182, 413
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 7 cut(s) 10, 55, 73, 229, 316, 568, 604
AjiI CACGTC 1 cut(s) 15
AluBI AGCT 2 cut(s) 28, 203
AluI AGCT 2 cut(s) 28, 203
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 2 cut(s) 596, 673
AseI ATTAAT 1 cut(s) 366
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 585
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BbsI GAAGAC 2 cut(s) 54, 148
BbvCI CCTCAGC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 583, 660
BceAI ACGGC 1 cut(s) 688
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BcoDI GTCTC 1 cut(s) 679
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 597, 674
BlsI GCNGC 2 cut(s) 598, 675
BmgBI CACGTC 1 cut(s) 15
BmsI GCATC 2 cut(s) 583, 655
BpiI GAAGAC 2 cut(s) 54, 148
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 436
BsaBI GATNNNNATC 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 413
Bse1I ACTGG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 213
BseGI GGATG 2 cut(s) 598, 670
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 182, 413
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 583, 660
BshFI GGCC 1 cut(s) 468
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 182, 413
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 3 cut(s) 440, 563, 649
BsnI GGCC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 585
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 59, 94
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 449
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 358
BssMI GATC 2 cut(s) 59, 94
BssNAI GTATAC 1 cut(s) 285
Bst1107I GTATAC 1 cut(s) 285
Bst6I CTCTTC 2 cut(s) 573, 599
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 39, 511
BstDEI CTNAG 2 cut(s) 297, 436
BstF5I GGATG 2 cut(s) 598, 670
BstKTI GATC 2 cut(s) 62, 97
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 2 cut(s) 59, 94
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 583, 660
BstV2I GAAGAC 2 cut(s) 54, 148
BstXI CCANNNNNNTGG 1 cut(s) 484
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 468
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 598, 670
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 3 cut(s) 327, 351, 675
Cac8I GCNNGC 2 cut(s) 39, 511
Csp6I GTAC 4 cut(s) 4, 335, 427, 610
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 3 cut(s) 103, 682, 714
CviJI RGCY 6 cut(s) 28, 186, 203, 468, 583, 696
CviKI_1 RGCY 6 cut(s) 28, 186, 203, 468, 583, 696
CviQI GTAC 4 cut(s) 4, 335, 427, 610
DdeI CTNAG 2 cut(s) 297, 436
DpnI GATC 2 cut(s) 61, 96
DpnII GATC 2 cut(s) 59, 94
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 2 cut(s) 573, 599
EarI CTCTTC 2 cut(s) 573, 599
Eco24I GRGCYC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 585
FaeI CATG 3 cut(s) 106, 685, 717
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 102, 681, 713
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 597, 674
FokI GGATG 2 cut(s) 605, 677
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 2 cut(s) 597, 674
GluI GCNGC 2 cut(s) 597, 674
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 1 cut(s) 468
Hin1II CATG 3 cut(s) 106, 685, 717
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 3 cut(s) 125, 170, 209
Hpy166II GTNNAC 3 cut(s) 285, 427, 529
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 2 cut(s) 518, 640
Hpy8I GTNNAC 3 cut(s) 285, 427, 529
HpyCH4IV ACGT 2 cut(s) 14, 111
HpyCH4V TGCA 4 cut(s) 41, 106, 402, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 297, 436
HpySE526I ACGT 2 cut(s) 14, 111
Hsp92II CATG 3 cut(s) 106, 685, 717
Kzo9I GATC 2 cut(s) 59, 94
LguI GCTCTTC 1 cut(s) 573
Lsp1109I GCAGC 2 cut(s) 583, 660
LweI GCATC 2 cut(s) 583, 655
MaeII ACGT 2 cut(s) 14, 111
MalI GATC 2 cut(s) 61, 96
MboI GATC 2 cut(s) 59, 94
MboII GAAGA 7 cut(s) 59, 85, 148, 151, 550, 590, 616
MhlI GDGCHC 1 cut(s) 585
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 3 cut(s) 385, 470, 568
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 8 cut(s) 89, 95, 139, 271, 445, 553, 600, 644
Mox20I TGGCCA 1 cut(s) 468
MscI TGGCCA 1 cut(s) 468
MseI TTAA 3 cut(s) 24, 114, 366
MslI CAYNNNNRTG 2 cut(s) 330, 368
Msp20I TGGCCA 1 cut(s) 468
Mva1269I GAATGC 3 cut(s) 440, 563, 649
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 2 cut(s) 59, 94
NlaIII CATG 3 cut(s) 106, 685, 717
NspI RCATGY 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 573
PctI GAATGC 3 cut(s) 440, 563, 649
PfeI GAWTC 2 cut(s) 125, 209
PkrI GCNGC 2 cut(s) 598, 675
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 366
PstI CTGCAG 1 cut(s) 43
RsaI GTAC 4 cut(s) 5, 336, 428, 611
RsaNI GTAC 4 cut(s) 4, 335, 427, 610
RseI CAYNNNNRTG 2 cut(s) 330, 368
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 3 cut(s) 24, 114, 366
SatI GCNGC 2 cut(s) 597, 674
Sau3AI GATC 2 cut(s) 59, 94
SbfI CCTGCAGG 1 cut(s) 43
SchI GAGTC 1 cut(s) 164
SdaI CCTGCAGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 585
SetI ASST 9 cut(s) 17, 30, 81, 87, 114, 205, 311, 528, 611
SfaNI GCATC 2 cut(s) 583, 655
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 330, 368
Sse8387I CCTGCAGG 1 cut(s) 43
Sse9I AATT 3 cut(s) 385, 470, 568
SsiI CCGC 1 cut(s) 148
TaiI ACGT 2 cut(s) 17, 114
TaqI TCGA 1 cut(s) 639
TasI AATT 3 cut(s) 385, 470, 568
TatI WGTACW 2 cut(s) 3, 426
TfiI GAWTC 2 cut(s) 125, 209
Tru1I TTAA 3 cut(s) 24, 114, 366
Tru9I TTAA 3 cut(s) 24, 114, 366
TscAI CASTG 3 cut(s) 334, 358, 675
TseI GCWGC 2 cut(s) 596, 673
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 3 cut(s) 334, 358, 675
VspI ATTAAT 1 cut(s) 366
XceI RCATGY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.