Rh1AG066500

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000196
Physical Location & Seq
Reverse (-)
11165498 .. 11168137
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG066500.1

Sequence Viewer

Length: 387 bp
ATGGCGAGCGGTGTAGAGAGAGAGCAAGTAGTGAGGAACAAGCAGGTGTTATTCAAAGACTATTTCACCGGCTTCCCCAAAGAATCTAACATGCAATTGACCACTAGTACAGCCACACTGAAGCTCCCACAAGGTTCCACTGGTGTTCTGGTCAAGAACCTCTACTTGTCCTGCGATCCTTATACTAAAATCCAGATGACCAAGCCTAGCTCTGATACTGATCCTTATACCAAAACCTTCACTCCTGGTTCGATTTCCTTCATTAAAACTGCATTTCTAAAAGCGTCACCACTTCCCCAATTGCAAATGACAATGGAAATGCTGAGGCTAATGAGGAGTGATGTATCAATTCTCAGTTTTCTCTTGTGCAAACTGAGAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

9.77

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 14 - 76 3.4e-09 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 170, 215
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 124, 210
AluI AGCT 2 cut(s) 124, 210
AlwI GGATC 2 cut(s) 170, 215
AsuHPI GGTGA 2 cut(s) 58, 279
BbvCI CCTCAGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 246
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 2 cut(s) 105, 207
BfuAI ACCTGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 219
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 226, 256
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 246
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 3 cut(s) 314, 365, 367
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 349
BsiSI CCGG 1 cut(s) 69
Bsp143I GATC 2 cut(s) 175, 220
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 315, 366, 366
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 2 cut(s) 170, 215
BsrBI CCGCTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 2 cut(s) 175, 220
Bst2UI CCWGG 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 323, 353, 374
BstKTI GATC 2 cut(s) 178, 223
BstMBI GATC 2 cut(s) 175, 220
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 116, 138
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 68
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 72, 113, 124, 205, 210, 328
CviKI_1 RGCY 6 cut(s) 72, 113, 124, 205, 210, 328
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 3 cut(s) 323, 353, 374
DpnI GATC 2 cut(s) 177, 222
DpnII GATC 2 cut(s) 175, 220
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 183, 228
FatI CATG 1 cut(s) 90
FspBI CTAG 2 cut(s) 105, 207
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 273
Hin1II CATG 1 cut(s) 94
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 58, 279
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 154, 193
HpyAV CCTTC 2 cut(s) 247, 268
HpyCH4V TGCA 4 cut(s) 94, 272, 304, 369
HpyF3I CTNAG 3 cut(s) 323, 353, 374
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 175, 220
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 8 cut(s) 29, 82, 126, 134, 184, 206, 231, 258
MaeI CTAG 2 cut(s) 105, 207
MaeIII GTNAC 1 cut(s) 285
MalI GATC 2 cut(s) 177, 222
MbiI CCGCTC 1 cut(s) 9
MboI GATC 2 cut(s) 175, 220
MfeI CAATTG 2 cut(s) 95, 299
MluCI AATT 3 cut(s) 95, 299, 348
MnlI CCTC 4 cut(s) 27, 170, 318, 327
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 2 cut(s) 95, 299
MvaI CCWGG 1 cut(s) 246
NdeII GATC 2 cut(s) 175, 220
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 285
NspI RCATGY 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 2 cut(s) 175, 220
ScrFI CCNGG 1 cut(s) 246
SetI ASST 6 cut(s) 48, 126, 136, 162, 212, 239
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 3 cut(s) 95, 299, 348
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 105, 207
StyD4I CCNGG 1 cut(s) 244
TaqI TCGA 1 cut(s) 251
TasI AATT 3 cut(s) 95, 299, 348
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 123, 145
TseFI GTSAC 1 cut(s) 285
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 2 cut(s) 123, 145
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 105, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.