Rh2BG004700

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000196
Physical Location & Seq
Forward (+)
376744 .. 378656
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG004700.1

Sequence Viewer

Length: 315 bp
ATGGATGGATGCAATAGAGAGAAGGAAATAGCAATGGCGAGTGGTGTGGAAAGAGAGCAAGTAGTAAGGAACAAGCAGGTGCTATTCAAAGACTATGTCACCGGCTTCCCCAAAGAATCTAACATGCAATTGACCACTAGTACAACCACACTGAAGCTCCCACAAGGTTCCACTGGTGTTCTGGTCAAGAACCTCTACTTGTCCTGCGATCCTTATACTAAAGCCCATATGACCAAGGCTAGCTCTGATACTCCTTCTTATATCAAAACCTTCGCTCCTGGTTCGCTGCCTCTAGCTGATGTTTCTATGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

104

Amino Acids

11.39

Weight (kDa)

8.58

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 25 - 85 2.4e-09 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 1 cut(s) 88
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 157, 243, 296
AluI AGCT 3 cut(s) 157, 243, 296
AlwI GGATC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 138, 240, 293
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 279
BmtI GCTAGC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 234
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 259, 289
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 10, 14
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 102
Bsp143I GATC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 67
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 241
BstF5I GGATG 2 cut(s) 10, 14
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 10, 14
BtsIMutI CAGTG 2 cut(s) 149, 171
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 101
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 124
CviJI RGCY 6 cut(s) 105, 157, 224, 239, 243, 296
CviKI_1 RGCY 6 cut(s) 105, 157, 224, 239, 243, 296
CviQI GTAC 1 cut(s) 141
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 127
FaiI YATR 7 cut(s) 96, 125, 216, 228, 230, 261, 308
FatI CATG 1 cut(s) 123
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 2 cut(s) 17, 21
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 3 cut(s) 138, 240, 293
GluI GCNGC 1 cut(s) 287
HapII CCGG 1 cut(s) 102
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 16, 264, 280
HpyCH4V TGCA 2 cut(s) 12, 127
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 162, 280
LpnPI CCDG 7 cut(s) 62, 115, 159, 167, 217, 264, 291
Lsp1109I GCAGC 1 cut(s) 273
MaeI CTAG 3 cut(s) 138, 240, 293
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MfeI CAATTG 1 cut(s) 128
MluCI AATT 1 cut(s) 128
MnlI CCTC 2 cut(s) 203, 300
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 228
NdeII GATC 1 cut(s) 208
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 116
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 279
SetI ASST 7 cut(s) 81, 159, 169, 195, 245, 272, 298
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 1 cut(s) 128
SspMI CTAG 3 cut(s) 138, 240, 293
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 234
TasI AATT 1 cut(s) 128
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 2 cut(s) 156, 178
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 97
TspRI CASTG 2 cut(s) 156, 178
Tth111I GACNNNGTC 1 cut(s) 95
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 3 cut(s) 138, 240, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.