RchiOBHm_Chr3g0484011

2-alkenal reductase (NADP( )-dependent)-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
30401036 .. 30402548
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44874

Sequence Viewer

Length: 411 bp
ATGGCTCTATTTTTTCTTGCTGAAAATGGTGCTAGCTTAGGTATCTCATCTGGTATTGTGGAAGCTGTATATATCACTGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTGCCACTACTAAACTCCAGCTTCCAAAAGGTTCGACTGGCCTCCTCGTCAAGAACCTCTACTTGTCCTGTGATCCTTACATGCGAAGCTATATGACCAAGCAGAAGGAAGAGGGTGAGGAGGGGGGCTATATATTGCTGTTATTTGTTTATAATATTGCTCAAGGATTGTTGCATTGTCTTGTAATTGGTTTGGGAGTGGCTAAAGTCCTGGAATCTGGGGATCCAAAGTTTAAGCCAGGAGTTTGTAGTACGACCAGGGGACTTGGTTTGGGGTCACACTGGTTGGGAAGAATATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.62

Weight (kDa)

8.42

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 25 - 74 1.6e-08 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AclWI GGATC 3 cut(s) 179, 329, 342
AfaI GTAC 1 cut(s) 364
AjnI CCWGG 3 cut(s) 321, 349, 368
AluBI AGCT 4 cut(s) 36, 65, 133, 201
AluI AGCT 4 cut(s) 36, 65, 133, 201
AlwI GGATC 3 cut(s) 179, 329, 342
AoxI GGCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 239
AsuNHI GCTAGC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 334
BciT130I CCWGG 3 cut(s) 323, 351, 370
BfaI CTAG 1 cut(s) 33
Bme1390I CCNGG 3 cut(s) 323, 351, 370
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 3 cut(s) 323, 351, 370
BmtI GCTAGC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 369
Bse1I ACTGG 3 cut(s) 82, 154, 398
BseBI CCWGG 3 cut(s) 323, 351, 370
BseDI CCNNGG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 82, 154, 398
BseRI GAGGAG 2 cut(s) 146, 245
BshFI GGCC 1 cut(s) 153
BslFI GGGAC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 184, 334
BspANI GGCC 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 336
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 3 cut(s) 179, 329, 342
BsrI ACTGG 3 cut(s) 82, 154, 398
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 2 cut(s) 184, 334
Bst2UI CCWGG 3 cut(s) 323, 351, 370
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 37
BstKTI GATC 2 cut(s) 187, 337
BstMBI GATC 2 cut(s) 184, 334
BstNI CCWGG 3 cut(s) 323, 351, 370
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 3 cut(s) 321, 349, 368
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 75, 111, 391
Cac8I GCNNGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 363
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 186, 336
DpnII GATC 2 cut(s) 184, 334
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EcoRII CCWGG 3 cut(s) 321, 349, 368
FaeI CATG 1 cut(s) 196
FaiI YATR 9 cut(s) 70, 72, 194, 204, 206, 243, 245, 264, 409
FaqI GGGAC 1 cut(s) 387
FatI CATG 1 cut(s) 192
FspBI CTAG 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 1 cut(s) 196
HinfI GANTC 2 cut(s) 92, 326
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 37
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 2 cut(s) 184, 334
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 387
MalI GATC 2 cut(s) 186, 336
MboI GATC 2 cut(s) 184, 334
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 334
MluCI AATT 2 cut(s) 104, 297
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 7 cut(s) 110, 164, 167, 179, 217, 223, 226
MseI TTAA 1 cut(s) 345
MspR9I CCNGG 3 cut(s) 323, 351, 370
MvaI CCWGG 3 cut(s) 323, 351, 370
NdeII GATC 2 cut(s) 184, 334
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 387
NspI RCATGY 1 cut(s) 196
PfeI GAWTC 2 cut(s) 92, 326
PfoI TCCNGGA 1 cut(s) 321
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 3 cut(s) 321, 349, 368
PspGI CCWGG 3 cut(s) 321, 349, 368
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 2 cut(s) 184, 334
ScrFI CCNGG 3 cut(s) 323, 351, 370
SetI ASST 8 cut(s) 38, 43, 67, 102, 135, 145, 171, 203
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 2 cut(s) 104, 297
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 321, 349, 368
TaqI TCGA 1 cut(s) 146
TasI AATT 2 cut(s) 104, 297
TfiI GAWTC 2 cut(s) 92, 326
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 3 cut(s) 82, 118, 398
TseFI GTSAC 1 cut(s) 387
Tsp45I GTSAC 1 cut(s) 387
TspRI CASTG 3 cut(s) 82, 118, 398
XceI RCATGY 1 cut(s) 196
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.