RLG00000015677

N-terminal domain of oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000196
Physical Location & Seq
Reverse (-)
577213 .. 578007
795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015677

Sequence Viewer

Length: 489 bp
ATGCAACAGATCGAATCTCTGATCAAGAGTACTGATGTGCCTCTCTCTTACTATACTGGAATTCTTGGTATGCCTGGACTGACTGCTTATATAGGTTTTTATGAGGTTTGCTCACCTAAGAAGGGAGCTCAGAGACGGTCTACATCTCAGCAGTATCTGGAGCCCGCAGTCGGTCAACTTGTTGGCCAATTTGCCAAACTCATGGGTTGCTGTGTCATTGCAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAACCTAACTTGGATGCAGCTCTAAAAAGGTACTTGCCTGAAGGTATTGATATTTACTTCGAAAATGTTGGGGGAAAGATGCTGTTCCGGGGGCGAATTGCAGTTTGTGGGATGATATCCCAATATAACCTTGAGAGGCCTGAAGGTCGCAATGTCGGAAAGCAGGTTGTTGTTGTTGTTTCCCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

163

Amino Acids

17.96

Weight (kDa)

8.62

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 56 - 127 1.4e-15 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 140
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 3 cut(s) 275, 357, 459
AfaI GTAC 2 cut(s) 31, 329
AfiI CCNNNNNNNGG 2 cut(s) 122, 170
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 128, 317
AluI AGCT 2 cut(s) 128, 317
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 480
AoxI GGCC 2 cut(s) 184, 434
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 480
BalI TGGCCA 1 cut(s) 186
BanII GRGCYC 2 cut(s) 130, 165
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 75, 386
BmeT110I CYCGRG 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 2 cut(s) 75, 386
BmsI GCATC 2 cut(s) 301, 366
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 170
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 216, 454
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 2 cut(s) 316, 414
BseLI CCNNNNNNNGG 2 cut(s) 122, 170
BseMI GCAATG 2 cut(s) 216, 454
BseMII CTCAG 2 cut(s) 143, 161
BseNI ACTGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 2 cut(s) 186, 436
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 122, 170
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 2 cut(s) 186, 436
BsoBI CYCGRG 1 cut(s) 480
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 130, 165
Bsp143I GATC 2 cut(s) 9, 21
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 186, 436
BspCNI CTCAG 2 cut(s) 142, 160
BspLI GGNNCC 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 451
BspT104I TTCGAA 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 216, 454
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 2 cut(s) 9, 21
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 117, 129, 147
BstF5I GGATG 2 cut(s) 316, 414
BstKTI GATC 2 cut(s) 12, 24
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 9, 21
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 384
BstV1I GCAGC 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 186, 436
BtsCI GGATG 2 cut(s) 316, 414
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 157
Csp6I GTAC 2 cut(s) 30, 328
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 128, 163, 186, 281, 317, 436
CviKI_1 RGCY 6 cut(s) 128, 163, 186, 281, 317, 436
CviQI GTAC 2 cut(s) 30, 328
DdeI CTNAG 3 cut(s) 117, 129, 147
DpnI GATC 2 cut(s) 11, 23
DpnII GATC 2 cut(s) 9, 21
EaeI YGGCCR 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 130, 165
Eco32I GATATC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 128
Eco57I CTGAAG 3 cut(s) 275, 357, 459
Eco88I CYCGRG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 1 cut(s) 414
EcoT38I GRGCYC 2 cut(s) 130, 165
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 1 cut(s) 205
FaiI YATR 8 cut(s) 54, 71, 90, 92, 102, 203, 291, 423
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 172
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 323, 421
FriOI GRGCYC 2 cut(s) 130, 165
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 186, 436
HapII CCGG 1 cut(s) 385
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 385
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 141, 176
Hpy188I TCNGA 3 cut(s) 21, 132, 455
Hpy188III TCNNGA 3 cut(s) 25, 158, 480
Hpy8I GTNNAC 2 cut(s) 141, 176
HpyAV CCTTC 3 cut(s) 115, 332, 434
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 4, 221, 314, 398
HpyF3I CTNAG 3 cut(s) 117, 129, 147
Hsp92II CATG 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 9, 21
LmnI GCTCC 2 cut(s) 125, 160
LpnPI CCDG 9 cut(s) 42, 60, 87, 143, 213, 348, 398, 446, 450
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 2 cut(s) 301, 366
MalI GATC 2 cut(s) 11, 23
MboI GATC 2 cut(s) 9, 21
MboII GAAGA 2 cut(s) 268, 308
MhlI GDGCHC 2 cut(s) 130, 165
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 4 cut(s) 60, 188, 286, 393
MluNI TGGCCA 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 4 cut(s) 51, 97, 271, 426
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 2 cut(s) 75, 386
MvaI CCWGG 1 cut(s) 75
NciI CCSGG 1 cut(s) 386
NdeII GATC 2 cut(s) 9, 21
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 357
PceI AGGCCT 1 cut(s) 436
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 316
PsiI TTATAA 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 31, 329
RsaNI GTAC 2 cut(s) 30, 328
SacI GAGCTC 1 cut(s) 130
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 9, 21
ScaI AGTACT 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 75, 386
SduI GDGCHC 2 cut(s) 130, 165
SfaNI GCATC 2 cut(s) 301, 366
SfuI TTCGAA 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 60, 188, 286, 393
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 1 cut(s) 165
SstI GAGCTC 1 cut(s) 130
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 73, 384
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 12, 357
TaqII GACCGA 1 cut(s) 161
TasI AATT 4 cut(s) 60, 188, 286, 393
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 1 cut(s) 14
TseI GCWGC 1 cut(s) 314
XapI RAATTY 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.