Rh2BG004600

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000196
Physical Location & Seq
Forward (+)
374022 .. 376235
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG004600.1

Sequence Viewer

Length: 327 bp
ATGGCGACTCCCTCTGAAGTGATCAGCAACAAGCAGGTGATACTGAGAGACTATGTCACCGGCTTCCCCAAAGAATCCGACATGGAATTGCGCAGTTCGGCCACAACCACACTGAAGCTGCCACAAGGTTCCACCGGGGTTCTCGTCAAGAATCTCTACTTGTCCTGCGATCCTTACATGAGAAACCGCATGACCAAACGTGAAACTGCCTCTTATGTCGAAACTTTCCATCCCGGTTTTGTGAGAGCTACGTTCCCTTTGAATAATACAATGTGTCTGGCCTTTGCAATTGGGGAAGTGGGGACTCTTTTAGAAATGCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

7.77

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 11 - 79 1e-12 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 25
AciI CCGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 36, 134
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 2 cut(s) 118, 248
AluI AGCT 2 cut(s) 118, 248
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 99, 279
ApeKI GCWGC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 93
AsuC2I CCSGG 2 cut(s) 136, 234
AsuHPI GGTGA 2 cut(s) 49, 49
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 237
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 2 cut(s) 136, 234
BcoDI GTCTC 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 2 cut(s) 136, 234
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 136, 234
BpuMI CCSGG 2 cut(s) 136, 234
BsaJI CCNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 2 cut(s) 101, 281
BsiSI CCGG 3 cut(s) 60, 135, 234
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 2 cut(s) 101, 281
Bsp143I GATC 2 cut(s) 21, 169
BspACI CCGC 1 cut(s) 187
BspANI GGCC 2 cut(s) 101, 281
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 21, 169
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 24, 172
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 21, 169
BstSCI CCNGG 2 cut(s) 134, 232
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 101, 281
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 110
BveI ACCTGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 59
CviAII CATG 3 cut(s) 82, 178, 190
CviJI RGCY 5 cut(s) 63, 101, 118, 248, 281
CviKI_1 RGCY 5 cut(s) 63, 101, 118, 248, 281
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 23, 171
DpnII GATC 2 cut(s) 21, 169
EaeI YGGCCR 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 36, 134
FaeI CATG 3 cut(s) 85, 181, 193
FaiI YATR 5 cut(s) 54, 83, 179, 191, 216
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 81, 177, 189
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 119
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 2 cut(s) 101, 281
HapII CCGG 3 cut(s) 60, 135, 234
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 85, 181, 193
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 4 cut(s) 7, 74, 151, 304
HpaII CCGG 3 cut(s) 60, 135, 234
HphI GGTGA 2 cut(s) 49, 49
Hpy188I TCNGA 2 cut(s) 16, 79
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4IV ACGT 2 cut(s) 199, 251
HpyCH4V TGCA 2 cut(s) 287, 319
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 2 cut(s) 199, 251
Hsp92II CATG 3 cut(s) 85, 181, 193
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 169
LpnPI CCDG 6 cut(s) 20, 73, 148, 178, 247, 263
Lsp1109I GCAGC 1 cut(s) 105
MaeII ACGT 2 cut(s) 199, 251
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 23, 171
MboI GATC 2 cut(s) 21, 169
MfeI CAATTG 1 cut(s) 288
MluCI AATT 2 cut(s) 86, 288
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 22, 220
MseI TTAA 1 cut(s) 325
MspI CCGG 3 cut(s) 60, 135, 234
MspR9I CCNGG 2 cut(s) 136, 234
MunI CAATTG 1 cut(s) 288
NciI CCSGG 2 cut(s) 136, 234
NdeII GATC 2 cut(s) 21, 169
NlaIII CATG 3 cut(s) 85, 181, 193
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 92
PaqCI CACCTGC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 74, 151
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 21, 169
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 136, 234
SetI ASST 6 cut(s) 39, 120, 130, 202, 250, 254
Sse9I AATT 2 cut(s) 86, 288
SsiI CCGC 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 134, 232
TaiI ACGT 2 cut(s) 202, 254
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 86, 288
TfiI GAWTC 2 cut(s) 74, 151
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 55
TspRI CASTG 1 cut(s) 117
Tth111I GACNNNGTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.