Rroxscaffold_7G00192960

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000196
Physical Location & Seq
Forward (+)
34355399 .. 34355839
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192960.1

Sequence Viewer

Length: 342 bp
ATGGAGAGTATGTGTACATTTCCTCACCATTCGGGACTGTTGGTCAGATTGTTGGCCAATGTGCCAAACTCATGGGTTGTTTTGTTGTTGGAAGTGCTGGCAGTCAGGAAGGGTTGTTATGTTGTTGGAAGTGCTGGCAGTCAGGAAAAGGTTGACATACTGAAGAACAAGTTTGGATTTGATGAGGCATTCAATTACAAGGAAGAGCCCGACTTGGATGCTGCTTTGAAGAGGTACTTCCCAAAGGGCATAGACATTTACTTCGAGAATGTTGGAGGCAAAATGCTGGATGCAATGCTGCTCAACATGAGACTTCACGGCCGATTGCCGTGTGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

6.82

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 33 - 112 2.4e-14 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 54, 319
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 2 cut(s) 16, 236
AgsI TTSAA 2 cut(s) 193, 229
AhdI GACNNNNNGTC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 304
AoxI GGCC 2 cut(s) 54, 319
ApeKI GCWGC 2 cut(s) 221, 298
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AsuHPI GGTGA 1 cut(s) 17
BalI TGGCCA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 208, 285
BceAI ACGGC 2 cut(s) 313, 334
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcoDI GTCTC 1 cut(s) 304
BisI GCNGC 2 cut(s) 222, 299
BlsI GCNGC 2 cut(s) 223, 300
BmeRI GACNNNNNGTC 1 cut(s) 41
BmsI GCATC 2 cut(s) 208, 280
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 300
BseGI GGATG 2 cut(s) 223, 295
BseMI GCAATG 1 cut(s) 300
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 208, 285
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 2 cut(s) 56, 321
BsiEI CGRYCG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 2 cut(s) 56, 321
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 14
BspANI GGCC 2 cut(s) 56, 321
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 198, 224
BstAUI TGTACA 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 99, 136
BstF5I GGATG 2 cut(s) 223, 295
BstMAI GTCTC 1 cut(s) 304
BstMCI CGRYCG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 208, 285
BstXI CCANNNNNNTGG 1 cut(s) 72
BstZI CGGCCG 1 cut(s) 319
BsuRI GGCC 2 cut(s) 56, 321
BtsCI GGATG 2 cut(s) 223, 295
Cac8I GCNNGC 2 cut(s) 99, 136
Csp6I GTAC 2 cut(s) 15, 235
CviAII CATG 3 cut(s) 72, 307, 339
CviJI RGCY 3 cut(s) 56, 208, 321
CviKI_1 RGCY 3 cut(s) 56, 208, 321
CviQI GTAC 2 cut(s) 15, 235
DriI GACNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 2 cut(s) 54, 319
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 198, 224
Eam1105I GACNNNNNGTC 1 cut(s) 41
EarI CTCTTC 2 cut(s) 198, 224
EclXI CGGCCG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 210
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 3 cut(s) 75, 310, 342
FaiI YATR 7 cut(s) 11, 73, 120, 158, 251, 308, 340
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 48
FatI CATG 3 cut(s) 71, 306, 338
Fnu4HI GCNGC 2 cut(s) 222, 299
FokI GGATG 2 cut(s) 230, 302
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 222, 299
GluI GCNGC 2 cut(s) 222, 299
HaeIII GGCC 2 cut(s) 56, 321
Hin1II CATG 3 cut(s) 75, 310, 342
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 15, 154
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 4 cut(s) 33, 106, 143, 265
Hpy8I GTNNAC 2 cut(s) 15, 154
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 293
Hsp92II CATG 3 cut(s) 75, 310, 342
LguI GCTCTTC 1 cut(s) 198
LpnPI CCDG 5 cut(s) 83, 91, 120, 128, 272
Lsp1109I GCAGC 2 cut(s) 208, 285
LweI GCATC 2 cut(s) 208, 280
MboII GAAGA 3 cut(s) 175, 215, 241
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 193
MluNI TGGCCA 1 cut(s) 56
MmeI TCCRAC 3 cut(s) 69, 106, 253
MnlI CCTC 4 cut(s) 33, 178, 225, 269
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 75, 310, 342
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 223, 300
RsaI GTAC 2 cut(s) 16, 236
RsaNI GTAC 2 cut(s) 15, 235
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 2 cut(s) 222, 299
SduI GDGCHC 1 cut(s) 210
SetI ASST 2 cut(s) 153, 236
SfaNI GCATC 2 cut(s) 208, 280
Sse9I AATT 1 cut(s) 193
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 193
TatI WGTACW 1 cut(s) 14
TseI GCWGC 2 cut(s) 221, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.