RLG00000013438

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000196
Physical Location & Seq
Forward (+)
31523563 .. 31525191
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013438

Sequence Viewer

Length: 861 bp
ATGGCTACTGCTGCTAATAGGAGTACTAATTACAAGGCAGGCGGTAATGATGATGATGATCTTGTTCAGCAAGTGAGGAACCAGCAAGTGCTAGCTAGAGACTACACAAGCGCCATTCCGGAGGAGATGGACATGTACTTGAACACGTCTATCATTAAGCTCAAAGTGCCAGCAGGAGAAGACTTCAAAGGATCGGTGCTGTTGAAGAACCTCTACCTCTCCTGCGATCTCTACATGCGAGGCGTGAAGCACAGTGATTCCTCCACTACCAAACAAGACCGCATTGTCTTCTTCTCCCCTGACTCTTGGGAGGAGTATACTCTCATCACTAAGACAGAAAACTTGTTCCAAATCAACCACACTGATATACCCCTTTCCTACTACACTAGACTTCTTGGAATGCCTGGTATGACTACTTATGCTGGTTTCTACGAAGTCTGCAATCCAAAGAAAGGAGAGTATGTGTACATTTCCTCAGCATTTGGGGCTGTTGGTCAAATTGTTGGCCAATTTGCCAAACTCATGTTATGTTGTTGGAAGTGCTGGCAGTCAAGAAAAGAGCCCAACTTGGATGCTGCTTTGAAGAGGTACTTCCCAGAGGGCATAGACATTTACTTCGAGAATGTTGGAGGCAAAATGCTGGATGCAGTGCTGCTCCACATGAGACTTCACGGCCGTATTGCCGTGTGTGGCATGATTTCGCAATACAATTACGAGCAACACGAAGGGGTCACCAACTTGATGCATCTGATTTACAAAGGCTTCTTCATGTTTGATTTCTACCACCTCTACCCTAAGTTCTTGGACCTGGTGGTGCCTTACATCAAGGAAGGGAAGATCGCCTATGTGGAGGACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

287

Amino Acids

32.85

Weight (kDa)

5.99

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 185 - 268 6.6e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 814
AccI GTMKAC 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 2 cut(s) 42, 280
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 2 cut(s) 505, 673
AfaI GTAC 4 cut(s) 25, 137, 467, 590
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 2 cut(s) 132, 144
AgsI TTSAA 4 cut(s) 142, 187, 205, 583
AjiI CACGTC 1 cut(s) 147
AjnI CCWGG 2 cut(s) 403, 807
AluBI AGCT 2 cut(s) 95, 160
AluI AGCT 2 cut(s) 95, 160
Alw26I GTCTC 2 cut(s) 93, 658
AlwI GGATC 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 2 cut(s) 505, 673
ApeKI GCWGC 3 cut(s) 11, 575, 652
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 805
AsuHPI GGTGA 1 cut(s) 724
AsuNHI GCTAGC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 805
BalI TGGCCA 1 cut(s) 507
BanI GGYRCC 1 cut(s) 814
BanII GRGCYC 1 cut(s) 564
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbsI GAAGAC 2 cut(s) 186, 280
BbvCI CCTCAGC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 562, 639
BccI CCATC 1 cut(s) 121
BceAI ACGGC 3 cut(s) 660, 668, 688
BciT130I CCWGG 2 cut(s) 405, 809
BcoDI GTCTC 2 cut(s) 93, 658
BfaI CTAG 3 cut(s) 92, 96, 387
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 3 cut(s) 12, 576, 653
BlsI GCNGC 3 cut(s) 13, 577, 654
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 405, 809
Bme18I GGWCC 1 cut(s) 805
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 2 cut(s) 80, 816
BmrFI CCNGG 2 cut(s) 405, 809
BmsI GCATC 4 cut(s) 562, 634, 732, 754
BmtI GCTAGC 1 cut(s) 95
BpiI GAAGAC 2 cut(s) 186, 280
Bpu10I CCTNAGC 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 2 cut(s) 405, 809
BseGI GGATG 2 cut(s) 577, 649
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 489
BseRI GAGGAG 2 cut(s) 137, 326
BseX3I CGGCCG 1 cut(s) 673
BseXI GCAGC 2 cut(s) 562, 639
Bsh1285I CGRYCG 1 cut(s) 676
BshFI GGCC 2 cut(s) 507, 675
BshNI GGYRCC 1 cut(s) 814
BsiEI CGRYCG 1 cut(s) 676
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 93, 658
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 507, 675
Bsp1286I GDGCHC 1 cut(s) 564
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 4 cut(s) 58, 191, 226, 837
BspACI CCGC 2 cut(s) 42, 280
BspANI GGCC 2 cut(s) 507, 675
BspCNI CTCAG 1 cut(s) 488
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 80, 816
BspOI GCTAGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 814
BsrGI TGTACA 1 cut(s) 465
BssMI GATC 4 cut(s) 58, 191, 226, 837
BssNAI GTATAC 1 cut(s) 318
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 405, 809
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 4 cut(s) 40, 93, 171, 545
BstDEI CTNAG 3 cut(s) 330, 475, 795
BstEII GGTNACC 1 cut(s) 730
BstF5I GGATG 2 cut(s) 577, 649
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 4 cut(s) 61, 194, 229, 840
BstMAI GTCTC 2 cut(s) 93, 658
BstMBI GATC 4 cut(s) 58, 191, 226, 837
BstMCI CGRYCG 1 cut(s) 676
BstMWI GCNNNNNNNGC 3 cut(s) 11, 166, 485
BstNI CCWGG 2 cut(s) 405, 809
BstNSI RCATGY 2 cut(s) 136, 238
BstPI GGTNACC 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 403, 807
BstV1I GCAGC 2 cut(s) 562, 639
BstV2I GAAGAC 2 cut(s) 186, 280
BstZ17I GTATAC 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 673
BsuRI GGCC 2 cut(s) 507, 675
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 577, 649
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 3 cut(s) 259, 360, 654
Cac8I GCNNGC 4 cut(s) 40, 93, 171, 545
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 805
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 4 cut(s) 24, 136, 466, 589
CviAII CATG 6 cut(s) 133, 235, 523, 661, 694, 769
CviJI RGCY 8 cut(s) 5, 95, 160, 488, 507, 562, 675, 762
CviKI_1 RGCY 8 cut(s) 5, 95, 160, 488, 507, 562, 675, 762
CviQI GTAC 4 cut(s) 24, 136, 466, 589
DdeI CTNAG 3 cut(s) 330, 475, 795
DpnI GATC 4 cut(s) 60, 193, 228, 839
DpnII GATC 4 cut(s) 58, 191, 226, 837
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 505, 673
EagI CGGCCG 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
EclXI CGGCCG 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 805
Eco52I CGGCCG 1 cut(s) 673
Eco91I GGTNACC 1 cut(s) 730
EcoO65I GGTNACC 1 cut(s) 730
EcoRII CCWGG 2 cut(s) 403, 807
EcoT22I ATGCAT 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 564
FaeI CATG 6 cut(s) 136, 238, 526, 664, 697, 772
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FatI CATG 6 cut(s) 132, 234, 522, 660, 693, 768
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 12, 576, 653
FokI GGATG 2 cut(s) 584, 656
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 3 cut(s) 12, 576, 653
FspBI CTAG 3 cut(s) 92, 96, 387
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 12, 576, 653
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 507, 675
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 136, 238, 526, 664, 697, 772
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 257, 302
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 2 cut(s) 318, 466
Hpy188I TCNGA 1 cut(s) 750
Hpy188III TCNNGA 3 cut(s) 119, 552, 619
Hpy8I GTNNAC 2 cut(s) 318, 466
HpyAV CCTTC 2 cut(s) 719, 824
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 441, 647, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 166, 485
HpyF3I CTNAG 3 cut(s) 330, 475, 795
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 6 cut(s) 136, 238, 526, 664, 697, 772
HspAI GCGC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 58, 191, 226, 837
LmnI GCTCC 1 cut(s) 660
Lsp1109I GCAGC 2 cut(s) 562, 639
LweI GCATC 4 cut(s) 562, 634, 732, 754
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 3 cut(s) 92, 96, 387
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 730
MalI GATC 4 cut(s) 60, 193, 228, 839
MboI GATC 4 cut(s) 58, 191, 226, 837
MboII GAAGA 7 cut(s) 191, 217, 280, 283, 595, 757, 847
MhlI GDGCHC 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 4 cut(s) 28, 498, 509, 709
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 515, 607
Mox20I TGGCCA 1 cut(s) 507
Mph1103I ATGCAT 1 cut(s) 747
MroI TCCGGA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 507
MseI TTAA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 507
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 405, 809
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 2 cut(s) 405, 809
MwoI GCNNNNNNNGC 3 cut(s) 11, 166, 485
NdeII GATC 4 cut(s) 58, 191, 226, 837
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 6 cut(s) 136, 238, 526, 664, 697, 772
NlaIV GGNNCC 2 cut(s) 80, 816
NmuCI GTSAC 1 cut(s) 730
NsiI ATGCAT 1 cut(s) 747
NspI RCATGY 2 cut(s) 136, 238
PciI ACATGT 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 13, 577, 654
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PscI ACATGT 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 403, 807
PspEI GGTNACC 1 cut(s) 730
PspGI CCWGG 2 cut(s) 403, 807
PspN4I GGNNCC 2 cut(s) 80, 816
PspPI GGNCC 1 cut(s) 805
RsaI GTAC 4 cut(s) 25, 137, 467, 590
RsaNI GTAC 4 cut(s) 24, 136, 466, 589
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 12, 576, 653
Sau3AI GATC 4 cut(s) 58, 191, 226, 837
Sau96I GGNCC 1 cut(s) 805
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 405, 809
SduI GDGCHC 1 cut(s) 564
SetI ASST 8 cut(s) 97, 149, 162, 213, 219, 590, 789, 810
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 4 cut(s) 562, 634, 732, 754
SinI GGWCC 1 cut(s) 805
Sse9I AATT 4 cut(s) 28, 498, 509, 709
SsiI CCGC 2 cut(s) 42, 280
SspMI CTAG 3 cut(s) 92, 96, 387
StyD4I CCNGG 2 cut(s) 403, 807
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 618
TasI AATT 4 cut(s) 28, 498, 509, 709
TatI WGTACW 3 cut(s) 23, 135, 465
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 259, 367, 654
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 3 cut(s) 11, 575, 652
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 1 cut(s) 757
TspRI CASTG 3 cut(s) 259, 367, 654
VpaK11BI GGWCC 1 cut(s) 805
XceI RCATGY 2 cut(s) 136, 238
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 3 cut(s) 92, 96, 387
ZrmI AGTACT 1 cut(s) 25
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.