Rroxscaffold_2G00155850

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000196
Physical Location & Seq
Reverse (-)
92343081 .. 92343568
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155850.1

Sequence Viewer

Length: 357 bp
ATGGCGAGTGGTGTGGAAAGAGAGCAAGTAGTAAGGAACAAGCAGGTGCGATTCAAAGACTATGTCACCGGCTTCCCCAAAGAATTTAACATGCAATTGACCACTAGTACAACCACACTGAAGCTCCCACAAGGTTCCACTGGTGTTCTGGTCAAGAACCTCTACTTGTCCTGCGATCCTTATACTAAAGCCCATATGACCAAGGCTAGCTCTGATACTCCTTATATCAAAACCTTCGCTCCTGGTTCGCCTATGACTGGATTTGGAGTGGCTAAAGTCTTGGAATCTGGGATGCAAACTTTAAGAGAAGCGACTTGGTTTGCGGAATCACTGGTTGGGAAGAATATAGTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

9.48

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 14 - 105 1.4e-14 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 34
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 2 cut(s) 124, 210
AluI AGCT 2 cut(s) 124, 210
AlwI GGATC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AsuHPI GGTGA 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 243
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 2 cut(s) 105, 207
BfuAI ACCTGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 145, 262, 336
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 3 cut(s) 145, 262, 336
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 257
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 210
BspPI GGATC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 3 cut(s) 145, 262, 336
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 116, 138, 329
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 68
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 72, 124, 191, 206, 210, 272
CviKI_1 RGCY 6 cut(s) 72, 124, 191, 206, 210, 272
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 94
FaiI YATR 9 cut(s) 63, 92, 183, 195, 197, 225, 254, 347, 355
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 195
FokI GGATG 1 cut(s) 304
FspBI CTAG 2 cut(s) 105, 207
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 94
HinfI GANTC 3 cut(s) 51, 284, 326
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 94, 295
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 129, 244
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 105, 207
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 352
MfeI CAATTG 1 cut(s) 95
MluCI AATT 2 cut(s) 83, 95
MnlI CCTC 1 cut(s) 170
MseI TTAA 2 cut(s) 87, 302
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 195
NdeII GATC 1 cut(s) 175
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 34
PfeI GAWTC 3 cut(s) 51, 284, 326
PflFI GACNNNGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 87, 302
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 243
SetI ASST 6 cut(s) 48, 126, 136, 162, 212, 236
SfaNI GCATC 1 cut(s) 282
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 2 cut(s) 83, 95
SsiI CCGC 1 cut(s) 323
SspMI CTAG 2 cut(s) 105, 207
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 201
TasI AATT 2 cut(s) 83, 95
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 3 cut(s) 51, 284, 326
Tru1I TTAA 2 cut(s) 87, 302
Tru9I TTAA 2 cut(s) 87, 302
TscAI CASTG 3 cut(s) 123, 145, 336
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspRI CASTG 3 cut(s) 123, 145, 336
Tth111I GACNNNGTC 1 cut(s) 62
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 105, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.