RchiOBHm_Chr2g0085311

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000196
Physical Location & Seq
Reverse (-)
796532 .. 797257
726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46087

Sequence Viewer

Length: 435 bp
ATGCAACAGAACGAATCTCTGTTCAAGATTCACAACACTGATGTGCCTCTCTCTTACTGTACTGGAATTCTTGGTATGCCTGGACTGACTGCTTATGTAGGTTTTTATGAGGTTTGCTCACCTAAGAAAGGAGAGACGACGGTCTATATCTCAGCAGCATCTGGAGCAGTCGGTCAACTTGTTGGCCAATTTGCCAAACTCATGGGTTGCTATGTCATTATTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAACCTAACTTTGTTGGGGGAAAGATGCTGGATGCAGTGCTACCAAACATGAAGTTCCGGGGGCGAATTGCAGTTTGTCGGATGATATCCCAATATAACCTTGAGAACCAGCTTAATATGGTGTATCATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

144

Amino Acids

15.92

Weight (kDa)

8.31

Isoelectric Point (pI)

25.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 56 - 104 2.6e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 2 cut(s) 25, 289
AjnI CCWGG 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 111
BalI TGGCCA 1 cut(s) 186
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 128
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 81, 359
BmrFI CCNGG 2 cut(s) 81, 359
BmsI GCATC 3 cut(s) 167, 315, 322
BoxI GACNNNNGTC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 337, 387
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 186
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 59, 142
BstDEI CTNAG 2 cut(s) 123, 151
BstENI CCTNNNNNAGG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 337, 387
BstMAI GTCTC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 81
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 79, 357
BstV1I GCAGC 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 337, 387
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 36, 342
CaiI CAGNNNCTG 1 cut(s) 161
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 202, 349
CviJI RGCY 3 cut(s) 186, 284, 412
CviKI_1 RGCY 3 cut(s) 186, 284, 412
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 123, 151
EaeI YGGCCR 1 cut(s) 184
Eco32I GATATC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 79
EcoRV GATATC 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 205, 352
FatI CATG 2 cut(s) 201, 348
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 344, 394
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 358
Hin1II CATG 2 cut(s) 205, 352
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 2 cut(s) 14, 28
HpaII CCGG 1 cut(s) 358
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 2 cut(s) 25, 162
Hpy8I GTNNAC 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 59, 142
HpyCH4V TGCA 3 cut(s) 4, 335, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 123, 151
Hsp92II CATG 2 cut(s) 205, 352
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 8 cut(s) 48, 66, 93, 147, 216, 314, 371, 422
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 3 cut(s) 167, 315, 322
MboII GAAGA 2 cut(s) 271, 311
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 4 cut(s) 66, 188, 289, 366
MluNI TGGCCA 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 3 cut(s) 57, 103, 274
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 2 cut(s) 81, 359
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 359
NlaIII CATG 2 cut(s) 205, 352
OliI CACNNNNGTG 1 cut(s) 41
PfeI GAWTC 2 cut(s) 14, 28
PkrI GCNGC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 81, 359
SetI ASST 7 cut(s) 103, 114, 124, 249, 307, 402, 414
SfaNI GCATC 3 cut(s) 167, 315, 322
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 66, 188, 289, 366
StyD4I CCNGG 2 cut(s) 79, 357
TaaI ACNGT 2 cut(s) 59, 142
TaqII GACCGA 1 cut(s) 161
TasI AATT 4 cut(s) 66, 188, 289, 366
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 2 cut(s) 14, 28
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 43, 342
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 2 cut(s) 43, 342
XagI CCTNNNNNAGG 1 cut(s) 126
XapI RAATTY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.