FvH4_5g31790

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000191
Physical Location & Seq
Reverse (-)
22934161 .. 22937408
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31790.t2

Sequence Viewer

Length: 1257 bp
ATGTTCTTTTTCTGTCTGTATTTAGTAGCAGTTGGGCAAGGTGGACACAAACCTTGTGTTCAAGCTTTTGGAGCAGATCAATTTGATAGAAACTATCCAGACGAGAGCAAAGCGAAAAGCTCATTCTTCAATTGGTGGTATTTTGGTATATGTGCAGGCCCCTTACTTACACTTGCAGTATTAGACTACATACAGGATAATCTTAGTTGGGGTCTGGGTTTCGGTCTTCCTTGTGTTGTGATGGTCTTTGCACTGCTTATTTTCCTTTCTGGGACTAGAAAATACCGGTTTAGTATCAAGGGGGAGGAGGAAAATGCATTTGGGAGAATTGGCAAGGTGTTTGCTACTGCATTGAGGAATCGGCGAACTACTTCTTTAGCAATAGCTTTAGAAGAGGAATCCCGCGGAACCTTGCCTCACCACAGTTCTGAACAATTCAAATTCCTCAACAAAGCCTTGGTTGCACCAGATGATTTGAAGGAAAAGGGGAAGCTGTGTACCATCACTGAGGTTGAAGAAGCAAAAGCAGTTCTTAGGTTGTTTCCGATTTGGATTACATGCTTGGTATATGCTATTGTGTTTGCACAGTTCTCGACTTTCTTCACTAAGCAAGGTGCCACCATGGACCGAACATTTGTGCCAGGTTTTGACATACCAGCTGCTGCACTGCAGTCATTTATAAGCCTTGTCATTATTGTATTCATTCCGATTTATGATCGTATTTTTGTGCCAATAGCAAGATCATTCACCAGGGAACCCTCTGGCATTACAATGCTACAAAGAATAGGAACCGGCATGTTTCTATCTATTATTTGCATGATAGTTGCAGCTTTAGTTGAGATACAAAGGCTCAAAACTGCCAAAGATTATAATCTGGTTGATAAGCCAAGTGCCACAGTCCCACTGAGTGTTTGGTGGTTAGTTCCTCAATATTTGTTAATCGGACTGGCCGATGTTTTCACCATGGTTGGTCTGCAAGAGTTCTTCTACGATCAGGTACCAAAAGATTTAAGAAGTATAGGACTTGCCCTTTACATCAGTATATTTGGTGTGGGAAGCTTTCTGAGCAGCTTTCTTATATCTGTTATTGAAGAAGCAACCAGTTGGGCAGGCCACACTAGCTGGTTTTCCAATAACCTTAATCGTGCACATCTTGATTACTTTTATTGGTTACTTGCTGTACTCAGTGCAGTACAGTTCGCCATCTACATGTGTATCGCAAAATCTTACTTTTATAATAGGGTTTCTACGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

419

Amino Acids

47.09

Weight (kDa)

8.32

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 52 - 490 1.6e-16 Major Facilitator Superfamily
PTR2 PF00854 103 - 509 1.6e-100 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 680, 870, 1236
Acc65I GGTACC 1 cut(s) 997
AccB1I GGYRCC 2 cut(s) 614, 997
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 403, 405
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 1 cut(s) 440
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 4 cut(s) 499, 999, 1182, 1194
AflIII ACRYGT 1 cut(s) 1209
AgeI ACCGGT 1 cut(s) 285
AgsI TTSAA 6 cut(s) 62, 130, 439, 478, 515, 1091
AjnI CCWGG 2 cut(s) 640, 749
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 9 cut(s) 65, 120, 386, 493, 659, 830, 1059, 1071, 1122
AluI AGCT 9 cut(s) 65, 120, 386, 493, 659, 830, 1059, 1071, 1122
Alw21I GWGCWC 1 cut(s) 1150
Alw44I GTGCAC 1 cut(s) 1146
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 3 cut(s) 157, 948, 1111
ApaLI GTGCAC 1 cut(s) 1146
ApeKI GCWGC 4 cut(s) 659, 662, 827, 1068
ApoI RAATTY 1 cut(s) 440
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AsiGI ACCGGT 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 370
Asp718I GGTACC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 158, 625
AsuHPI GGTGA 3 cut(s) 410, 739, 952
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 1150
BaeI ACNNNNGTAYC 2 cut(s) 1198, 1231
BanI GGYRCC 2 cut(s) 614, 997
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 1150
BbvI GCAGC 4 cut(s) 646, 649, 839, 1080
BccI CCATC 3 cut(s) 235, 509, 1211
BcgI CGANNNNNNTGC 2 cut(s) 573, 607
BciT130I CCWGG 2 cut(s) 642, 751
BfaI CTAG 2 cut(s) 276, 1119
BfmI CTRYAG 1 cut(s) 668
BisI GCNGC 4 cut(s) 660, 663, 828, 1069
BlsI GCNGC 4 cut(s) 661, 664, 829, 1070
Bme1390I CCNGG 2 cut(s) 642, 751
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 158, 625
BmiI GGNNCC 6 cut(s) 160, 409, 616, 756, 790, 999
BmrFI CCNGG 2 cut(s) 642, 751
BpiI GAAGAC 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 5 cut(s) 403, 456, 621, 750, 963
BsaWI WCCGGW 1 cut(s) 285
Bse118I RCCGGY 2 cut(s) 285, 791
Bse1I ACTGG 2 cut(s) 951, 1101
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 2 cut(s) 642, 751
BseDI CCNNGG 5 cut(s) 403, 456, 621, 750, 963
BseJI GATNNNNATC 1 cut(s) 870
BseMII CTCAG 4 cut(s) 498, 896, 1055, 1198
BseNI ACTGG 2 cut(s) 951, 1101
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 4 cut(s) 646, 649, 839, 1080
BsgI GTGCAG 3 cut(s) 174, 648, 1209
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 159, 950, 1113
BshNI GGYRCC 2 cut(s) 614, 997
BshTI ACCGGT 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 1150
BsiSI CCGG 2 cut(s) 286, 792
BslFI GGGAC 2 cut(s) 286, 884
BsmFI GGGAC 2 cut(s) 286, 884
BsnI GGCC 3 cut(s) 159, 950, 1113
Bsp1286I GDGCHC 1 cut(s) 1150
Bsp143I GATC 4 cut(s) 76, 715, 740, 991
Bsp19I CCATGG 2 cut(s) 621, 963
BspACI CCGC 2 cut(s) 403, 405
BspANI GGCC 3 cut(s) 159, 950, 1113
BspCNI CTCAG 4 cut(s) 499, 897, 1056, 1197
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 6 cut(s) 160, 409, 616, 756, 790, 999
BspMAI CTGCAG 1 cut(s) 672
BspT107I GGYRCC 2 cut(s) 614, 997
BsrFI RCCGGY 2 cut(s) 285, 791
BsrI ACTGG 2 cut(s) 951, 1101
BssAI RCCGGY 2 cut(s) 285, 791
BssECI CCNNGG 5 cut(s) 403, 456, 621, 750, 963
BssMI GATC 4 cut(s) 76, 715, 740, 991
BssT1I CCWWGG 3 cut(s) 456, 621, 963
Bst2UI CCWGG 2 cut(s) 642, 751
Bst4CI ACNGT 5 cut(s) 425, 588, 898, 1197, 1252
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 157, 1111
BstDEI CTNAG 7 cut(s) 203, 507, 533, 606, 905, 1064, 1184
BstDSI CCRYGG 3 cut(s) 403, 621, 963
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 4 cut(s) 79, 718, 743, 994
BstMBI GATC 4 cut(s) 76, 715, 740, 991
BstMWI GCNNNNNNNGC 4 cut(s) 71, 461, 1065, 1119
BstNI CCWGG 2 cut(s) 642, 751
BstNSI RCATGY 3 cut(s) 561, 799, 1213
BstSCI CCNGG 2 cut(s) 640, 749
BstSFI CTRYAG 1 cut(s) 668
BstSLI GKGCMC 1 cut(s) 1150
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 646, 649, 839, 1080
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 159, 950, 1113
BtgI CCRYGG 3 cut(s) 403, 621, 963
BtsI GCAGTG 2 cut(s) 251, 665
BtsIMutI CAGTG 5 cut(s) 251, 504, 665, 902, 1192
Cac8I GCNNGC 2 cut(s) 157, 1111
CaiI CAGNNNCTG 1 cut(s) 662
Cfr10I RCCGGY 2 cut(s) 285, 791
Cfr13I GGNCC 2 cut(s) 158, 625
Cfr42I CCGCGG 1 cut(s) 406
Csp6I GTAC 4 cut(s) 498, 998, 1181, 1193
CspAI ACCGGT 1 cut(s) 285
CviAII CATG 6 cut(s) 558, 622, 796, 817, 964, 1210
CviQI GTAC 4 cut(s) 498, 998, 1181, 1193
DdeI CTNAG 7 cut(s) 203, 507, 533, 606, 905, 1064, 1184
DpnI GATC 4 cut(s) 78, 717, 742, 993
DpnII GATC 4 cut(s) 76, 715, 740, 991
DraIII CACNNNGTG 1 cut(s) 908
EaeI YGGCCR 1 cut(s) 948
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 3 cut(s) 456, 621, 963
Eco47I GGWCC 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 640, 749
EcoT14I CCWWGG 3 cut(s) 456, 621, 963
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 3 cut(s) 456, 621, 963
FaeI CATG 6 cut(s) 561, 625, 799, 820, 967, 1213
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 2 cut(s) 286, 884
FatI CATG 6 cut(s) 557, 621, 795, 816, 963, 1209
FauI CCCGC 1 cut(s) 410
Fnu4HI GCNGC 4 cut(s) 660, 663, 828, 1069
Fsp4HI GCNGC 4 cut(s) 660, 663, 828, 1069
FspBI CTAG 2 cut(s) 276, 1119
GluI GCNGC 4 cut(s) 660, 663, 828, 1069
HaeIII GGCC 3 cut(s) 159, 950, 1113
HapII CCGG 2 cut(s) 286, 792
Hin1II CATG 6 cut(s) 561, 625, 799, 820, 967, 1213
HindIII AAGCTT 2 cut(s) 63, 1057
HinfI GANTC 2 cut(s) 358, 398
HpaII CCGG 2 cut(s) 286, 792
HphI GGTGA 3 cut(s) 410, 739, 952
Hpy166II GTNNAC 3 cut(s) 44, 498, 1148
Hpy188I TCNGA 5 cut(s) 430, 546, 708, 944, 1065
Hpy188III TCNNGA 3 cut(s) 98, 592, 1154
Hpy8I GTNNAC 3 cut(s) 44, 498, 1148
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 5 cut(s) 425, 588, 898, 1197, 1252
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 461, 1065, 1119
HpyF3I CTNAG 7 cut(s) 203, 507, 533, 606, 905, 1064, 1184
Hsp92II CATG 6 cut(s) 561, 625, 799, 820, 967, 1213
KpnI GGTACC 1 cut(s) 1001
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 4 cut(s) 76, 715, 740, 991
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 4 cut(s) 646, 649, 839, 1080
MaeI CTAG 2 cut(s) 276, 1119
MaeIII GTNAC 1 cut(s) 1170
MalI GATC 4 cut(s) 78, 717, 742, 993
MboI GATC 4 cut(s) 76, 715, 740, 991
MboII GAAGA 7 cut(s) 118, 218, 404, 527, 592, 976, 1103
MfeI CAATTG 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 1150
MluCI AATT 5 cut(s) 80, 130, 327, 434, 440
MnlI CCTC 9 cut(s) 298, 301, 348, 388, 426, 455, 502, 769, 936
Mph1103I ATGCAT 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 3 cut(s) 938, 1010, 1140
MslI CAYNNNNRTG 2 cut(s) 770, 1208
MspA1I CMGCKG 2 cut(s) 405, 659
MspI CCGG 2 cut(s) 286, 792
MspR9I CCNGG 2 cut(s) 642, 751
MunI CAATTG 1 cut(s) 130
MvaI CCWGG 2 cut(s) 642, 751
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 71, 461, 1065, 1119
NcoI CCATGG 2 cut(s) 621, 963
NdeII GATC 4 cut(s) 76, 715, 740, 991
NlaIII CATG 6 cut(s) 561, 625, 799, 820, 967, 1213
NlaIV GGNNCC 6 cut(s) 160, 409, 616, 756, 790, 999
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 3 cut(s) 561, 799, 1213
PciI ACATGT 1 cut(s) 1209
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 358, 398
PinAI ACCGGT 1 cut(s) 285
PkrI GCNGC 4 cut(s) 661, 664, 829, 1070
PscI ACATGT 1 cut(s) 1209
PsiI TTATAA 3 cut(s) 680, 870, 1236
Psp6I CCWGG 2 cut(s) 640, 749
PspGI CCWGG 2 cut(s) 640, 749
PspN4I GGNNCC 6 cut(s) 160, 409, 616, 756, 790, 999
PspPI GGNCC 2 cut(s) 158, 625
PstI CTGCAG 1 cut(s) 672
PstNI CAGNNNCTG 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 4 cut(s) 499, 999, 1182, 1194
RsaNI GTAC 4 cut(s) 498, 998, 1181, 1193
RseI CAYNNNNRTG 2 cut(s) 770, 1208
SacII CCGCGG 1 cut(s) 406
SaqAI TTAA 3 cut(s) 938, 1010, 1140
SatI GCNGC 4 cut(s) 660, 663, 828, 1069
Sau3AI GATC 4 cut(s) 76, 715, 740, 991
Sau96I GGNCC 2 cut(s) 158, 625
ScrFI CCNGG 2 cut(s) 642, 751
SduI GDGCHC 1 cut(s) 1150
SfcI CTRYAG 1 cut(s) 668
Sfr303I CCGCGG 1 cut(s) 406
SgrBI CCGCGG 1 cut(s) 406
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 770, 1208
Sse9I AATT 5 cut(s) 80, 130, 327, 434, 440
SsiI CCGC 2 cut(s) 403, 405
SspI AATATT 1 cut(s) 932
SspMI CTAG 2 cut(s) 276, 1119
StyD4I CCNGG 2 cut(s) 640, 749
StyI CCWWGG 3 cut(s) 456, 621, 963
TaaI ACNGT 5 cut(s) 425, 588, 898, 1197, 1252
TaqI TCGA 1 cut(s) 593
TaqII GACCGA 2 cut(s) 212, 642
TasI AATT 5 cut(s) 80, 130, 327, 434, 440
TatI WGTACW 2 cut(s) 1180, 1192
TfiI GAWTC 2 cut(s) 358, 398
Tru1I TTAA 3 cut(s) 938, 1010, 1140
Tru9I TTAA 3 cut(s) 938, 1010, 1140
TscAI CASTG 5 cut(s) 258, 511, 672, 909, 1192
TseI GCWGC 4 cut(s) 659, 662, 827, 1068
TspDTI ATGAA 1 cut(s) 691
TspRI CASTG 5 cut(s) 258, 511, 672, 909, 1192
VneI GTGCAC 1 cut(s) 1146
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 1 cut(s) 440
XceI RCATGY 3 cut(s) 561, 799, 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 2 cut(s) 276, 1119
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.