Rh4AG180200

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000191
Physical Location & Seq
Reverse (-)
45030926 .. 45034335
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG180200.1

Sequence Viewer

Length: 531 bp
ATGGCCAACTCCTACTACGAGTCTCCGGCCACCCAAACTCCACTACTACCCGACGATGACGACGACGTGGTGGAGGCCGCCGTTGACTACCAAGGACACCCGGTCCTCAGGTCCACCTCAGGCGGTTGGCGTTCCGCCTCATTCATAATAGGTGTGGAGATTGCGGAGAGGGTCGCCTACTCTGGTATTGCCTCCAACCTTATCTCCTATCTGACAGGGCCTCTGGGTCAGTCAACGGCCACGGCGGCTCAAAATGTCAACGTTTGGGACGGAACGGCGTCGTTGCTCACTTTGTTTGGAGCGTTCTTGGCCGATTCTTACCTCGGACGCTACCGCACCATCGTTGTTGCTTCTCTCCTCTACATTTTGCTACTACAGAACCGGCTGTCAACATTACTTGTTGTCCGGATGAAGGATGTCGTCGTGGACCTTGGGGGAAGGTGTTGGTTAGATATTGACTATGACTATGTATACTGGATTCCATGGCAGGTTAACTGGCAGTGCAGTTCCCGACCGCTTTGTCTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

176

Amino Acids

19.46

Weight (kDa)

4.43

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 519
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 405
AciI CCGC 7 cut(s) 78, 123, 135, 164, 245, 334, 515
AclI AACGTT 1 cut(s) 261
AcoI YGGCCR 4 cut(s) 3, 27, 237, 309
AcyI GRCGYC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 412
AhdI GACNNNNNGTC 1 cut(s) 101
AjiI CACGTC 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 27, 527
Aor13HI TCCGGA 1 cut(s) 405
AoxI GGCC 6 cut(s) 3, 27, 75, 218, 237, 309
AspS9I GGNCC 4 cut(s) 103, 111, 218, 427
AsuC2I CCSGG 1 cut(s) 101
AvaII GGWCC 3 cut(s) 103, 111, 427
AxyI CCTNAGG 2 cut(s) 107, 118
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 347
BceAI ACGGC 4 cut(s) 65, 252, 258, 291
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 27, 527
BfmI CTRYAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 478
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 78, 246
BlsI GCNGC 2 cut(s) 79, 247
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 3 cut(s) 103, 111, 427
BmeRI GACNNNNNGTC 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 103, 111, 218, 427
BmrFI CCNGG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 5 cut(s) 91, 240, 322, 430, 482
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 479, 500
Bse21I CCTNAGG 2 cut(s) 107, 118
BseAI TCCGGA 1 cut(s) 405
BseDI CCNNGG 5 cut(s) 91, 240, 322, 430, 482
BseGI GGATG 2 cut(s) 414, 421
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 121, 132
BseNI ACTGG 2 cut(s) 479, 500
BseRI GAGGAG 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 523
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 6 cut(s) 5, 29, 77, 220, 239, 311
BsiEI CGRYCG 1 cut(s) 515
BsiSI CCGG 4 cut(s) 26, 101, 382, 406
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 27, 527
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 6 cut(s) 5, 29, 77, 220, 239, 311
Bsp13I TCCGGA 1 cut(s) 405
Bsp19I CCATGG 1 cut(s) 482
BspACI CCGC 7 cut(s) 78, 123, 135, 164, 245, 334, 515
BspANI GGCC 6 cut(s) 5, 29, 77, 220, 239, 311
BspCNI CTCAG 2 cut(s) 120, 131
BspEI TCCGGA 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 2 cut(s) 479, 500
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 5 cut(s) 91, 240, 322, 430, 482
BssNAI GTATAC 1 cut(s) 472
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 3 cut(s) 91, 430, 482
Bst1107I GTATAC 1 cut(s) 472
BstACI GRCGYC 1 cut(s) 278
BstDEI CTNAG 2 cut(s) 107, 118
BstDSI CCRYGG 2 cut(s) 240, 482
BstF5I GGATG 2 cut(s) 414, 421
BstMAI GTCTC 2 cut(s) 27, 527
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 2 cut(s) 245, 308
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 374
BstZ17I GTATAC 1 cut(s) 472
Bsu36I CCTNAGG 2 cut(s) 107, 118
BsuRI GGCC 6 cut(s) 5, 29, 77, 220, 239, 311
BtgI CCRYGG 2 cut(s) 240, 482
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 414, 421
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 1 cut(s) 506
BveI ACCTGC 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 4 cut(s) 103, 111, 218, 427
CseI GACGC 2 cut(s) 267, 336
CviAII CATG 1 cut(s) 483
CviJI RGCY 8 cut(s) 5, 29, 77, 220, 239, 248, 311, 385
CviKI_1 RGCY 8 cut(s) 5, 29, 77, 220, 239, 248, 311, 385
DdeI CTNAG 2 cut(s) 107, 118
DrdI GACNNNNNNGTC 1 cut(s) 519
DriI GACNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 519
EaeI YGGCCR 4 cut(s) 3, 27, 237, 309
Eam1105I GACNNNNNGTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 91, 430, 482
Eco47I GGWCC 3 cut(s) 103, 111, 427
Eco81I CCTNAGG 2 cut(s) 107, 118
EcoO109I RGGNCCY 1 cut(s) 218
EcoT14I CCWWGG 3 cut(s) 91, 430, 482
ErhI CCWWGG 3 cut(s) 91, 430, 482
FaeI CATG 1 cut(s) 486
FaiI YATR 5 cut(s) 146, 462, 468, 472, 484
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 482
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 2 cut(s) 78, 246
FokI GGATG 2 cut(s) 421, 428
Fsp4HI GCNGC 2 cut(s) 78, 246
GluI GCNGC 2 cut(s) 78, 246
HaeIII GGCC 6 cut(s) 5, 29, 77, 220, 239, 311
HapII CCGG 4 cut(s) 26, 101, 382, 406
HgaI GACGC 2 cut(s) 267, 336
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 1 cut(s) 486
HincII GTYRAC 5 cut(s) 85, 234, 259, 390, 493
HindII GTYRAC 5 cut(s) 85, 234, 259, 390, 493
HinfI GANTC 3 cut(s) 20, 314, 478
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 4 cut(s) 26, 101, 382, 406
Hpy166II GTNNAC 8 cut(s) 85, 114, 234, 259, 390, 427, 472, 493
Hpy188I TCNGA 2 cut(s) 213, 326
Hpy188III TCNNGA 2 cut(s) 406, 510
Hpy8I GTNNAC 8 cut(s) 85, 114, 234, 259, 390, 427, 472, 493
Hpy99I CGWCG 5 cut(s) 56, 65, 68, 283, 425
HpyAV CCTTC 2 cut(s) 406, 432
HpyCH4IV ACGT 2 cut(s) 66, 261
HpyCH4V TGCA 1 cut(s) 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 308
HpyF3I CTNAG 2 cut(s) 107, 118
HpySE526I ACGT 2 cut(s) 66, 261
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 1 cut(s) 486
Kpn2I TCCGGA 1 cut(s) 405
KspAI GTTAAC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 299
MaeII ACGT 2 cut(s) 66, 261
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 67, 116, 127, 148, 162, 202, 231, 332, 368
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 26, 101, 382, 406
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 245, 308
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 482
NlaIII CATG 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 2 cut(s) 314, 478
PkrI GCNGC 2 cut(s) 79, 247
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp1406I AACGTT 1 cut(s) 261
PspPI GGNCC 4 cut(s) 103, 111, 218, 427
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 2 cut(s) 78, 246
Sau96I GGNCC 4 cut(s) 103, 111, 218, 427
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 374
SinI GGWCC 3 cut(s) 103, 111, 427
SsiI CCGC 7 cut(s) 78, 123, 135, 164, 245, 334, 515
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 3 cut(s) 91, 430, 482
TaiI ACGT 2 cut(s) 69, 264
TauI GCSGC 2 cut(s) 80, 248
TfiI GAWTC 2 cut(s) 314, 478
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 506
TspDTI ATGAA 2 cut(s) 133, 425
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 506
VpaK11BI GGWCC 3 cut(s) 103, 111, 427
XmiI GTMKAC 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.