RchiOBHm_Chr7g0227761

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000191
Physical Location & Seq
Reverse (-)
50989851 .. 50991142
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20401

Sequence Viewer

Length: 612 bp
ATGGTCCGGAACATCGTTCTTGTTTCCTCTATTGGGAGCGTTCGTGGCGGATTCTTTTCTCGGTCGCTACCGCACCATTATTGTTGCTTCTCTGCTCTACATTTTGTTGTAGGACTCGGCTTGTTGACCGTGTCGGCCTTGCTTACTTCTTCTGAGCTTCAAATAGTGTTATTCTTCTTCTCTCTATATCTAGTAGCAGTTGCGCAAGGTGGACACAAGCCCTGTGTTCAGGTTTTAGGGGCAGATCAGTTTGATGGACAAGATCCAGTGGAGTGCAAAGCGAAAAGCTCATTCTTCAATTGGTGGTACTTTGGTATGAATGCAGGCATACTATTGACATTCTCAGTATTGACCTACATACAGGACAATCTAAGCTGGGGTCTGGGTTTTGGAATTCCTTGTGTTGTGATGGTCCTTGCACTGATTATTTTTGTCAGTGGAACTAGGACATACCGGTATAGCATCCAAGGGGAGGAGGAAAGCCCATTTGTGAGAATTGGCAAGGTTTTTGTTGCTGCATTAAGGAACTGGCGAACTAGTCCTTCAGCAATACCTTCTGAAGAGGAATCCCGTGGAACCTTGCCTGATCAAAGGTCTGAACAATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

203

Amino Acids

22.49

Weight (kDa)

7.66

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 30 - 178 2.3e-38 POT family
MFS_1 PF07690 35 - 166 5.2e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 6
AciI CCGC 2 cut(s) 48, 71
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 2 cut(s) 528, 579
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 33, 472
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 3 cut(s) 161, 298, 607
AhlI ACTAGT 1 cut(s) 536
AluBI AGCT 3 cut(s) 157, 288, 375
AluI AGCT 3 cut(s) 157, 288, 375
AlwI GGATC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 393
AsiGI ACCGGT 1 cut(s) 453
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 4, 412
AvaII GGWCC 2 cut(s) 4, 412
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BbvI GCAGC 1 cut(s) 502
BccI CCATC 2 cut(s) 248, 403
BclI TGATCA 1 cut(s) 586
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 3 cut(s) 191, 444, 537
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme18I GGWCC 2 cut(s) 4, 412
BmgT120I GGNCC 2 cut(s) 4, 412
BmiI GGNNCC 1 cut(s) 577
BmsI GCATC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 466, 571
BsaWI WCCGGW 2 cut(s) 6, 453
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 472
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 266, 533
BseAI TCCGGA 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 466, 571
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 33, 472
BseMII CTCAG 2 cut(s) 144, 357
BseNI ACTGG 2 cut(s) 266, 533
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 1 cut(s) 502
BseYI CCCAGC 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 7, 454
BslI CCNNNNNNNGG 2 cut(s) 33, 472
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 3 cut(s) 244, 262, 586
BspACI CCGC 2 cut(s) 48, 71
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 145, 356
BspEI TCCGGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 2 cut(s) 266, 533
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 466, 571
BssMI GATC 3 cut(s) 244, 262, 586
BssT1I CCWWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 3 cut(s) 153, 343, 371
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 247, 265, 589
BstMBI GATC 3 cut(s) 244, 262, 586
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 273, 419, 442
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 4, 412
Csp6I GTAC 1 cut(s) 307
CspAI ACCGGT 1 cut(s) 453
CviJI RGCY 7 cut(s) 120, 137, 157, 220, 288, 375, 483
CviKI_1 RGCY 7 cut(s) 120, 137, 157, 220, 288, 375, 483
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 153, 343, 371
DpnI GATC 3 cut(s) 246, 264, 588
DpnII GATC 3 cut(s) 244, 262, 586
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 4, 412
Eco57I CTGAAG 2 cut(s) 528, 579
EcoRI GAATTC 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FaiI YATR 6 cut(s) 187, 317, 329, 359, 451, 459
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 3 cut(s) 191, 444, 537
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 516
GsaI CCCAGC 1 cut(s) 379
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 7, 454
HhaI GCGC 1 cut(s) 205
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 3 cut(s) 51, 114, 566
HpaII CCGG 2 cut(s) 7, 454
Hpy166II GTNNAC 2 cut(s) 126, 212
Hpy188I TCNGA 3 cut(s) 154, 559, 598
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 126, 212
HpyAV CCTTC 2 cut(s) 552, 564
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 276, 323, 419, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 3 cut(s) 153, 343, 371
HspAI GCGC 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 244, 262, 586
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 471
MaeI CTAG 3 cut(s) 191, 444, 537
MalI GATC 3 cut(s) 246, 264, 588
MboI GATC 3 cut(s) 244, 262, 586
MboII GAAGA 5 cut(s) 141, 166, 169, 286, 572
MfeI CAATTG 1 cut(s) 298
MflI RGATCY 1 cut(s) 262
MluCI AATT 4 cut(s) 298, 393, 495, 602
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 4 cut(s) 37, 466, 469, 556
MroI TCCGGA 1 cut(s) 6
MseI TTAA 1 cut(s) 521
MspI CCGG 2 cut(s) 7, 454
MunI CAATTG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 3 cut(s) 244, 262, 586
NlaIV GGNNCC 1 cut(s) 577
NmeAIII GCCGAG 1 cut(s) 96
NsbI TGCGCA 1 cut(s) 204
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 51, 566
PflFI GACNNNGTC 1 cut(s) 130
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 2 cut(s) 4, 412
PsuI RGATCY 1 cut(s) 262
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 3 cut(s) 244, 262, 586
Sau96I GGNCC 2 cut(s) 4, 412
SchI GAGTC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 471
SinI GGWCC 2 cut(s) 4, 412
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 4 cut(s) 298, 393, 495, 602
SsiI CCGC 2 cut(s) 48, 71
SspMI CTAG 3 cut(s) 191, 444, 537
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 130
TaqII GACCGA 1 cut(s) 51
TasI AATT 4 cut(s) 298, 393, 495, 602
TfiI GAWTC 2 cut(s) 51, 566
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 3 cut(s) 273, 426, 442
TseI GCWGC 1 cut(s) 515
TspDTI ATGAA 1 cut(s) 332
TspRI CASTG 3 cut(s) 273, 426, 442
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 4, 412
XapI RAATTY 1 cut(s) 393
XspI CTAG 3 cut(s) 191, 444, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.