Rmu_sc0010635.1_g000001

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010635.1
OG0000191
Physical Location & Seq
Reverse (-)
2 .. 2088
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010635.1_g000001.1.cds

Sequence Viewer

Length: 992 bp
atggatgagaagagatttccgaaatccgaaatccgagaaatggaacttagttgtagtaatgttatttgcatgtatctgggtgtttacgatgtgaaaatgaacgagggactcggcttgttgaccgtgtcggccttgcttacttcttctgagcttcaaatagtgttattcttcttctctctatatctagtagcagttgcgcaaggtggacacaagccctgtgttcaggctttaggggcagatcagtttgatggacaagatccagtggagtgcaaagcgaaaagctcattcttcaattggtggtactttggtatgaatgcaggcatactattgacattctcagtattgacctacatacaggacaatctaagctggggtctgggttttggaattccttgtgttgtgatggtccttgcactgattatttttgtcagtggaactaggacataccggtatagcatccaaggggaggaggaaagcccatttgtgagaattggcaaggtttttgttgctgcattaaggaactggcgaactagtccttcagcaatagcttctgaagaggaatcccgtggaaccttgcctgatcaaaggttcctcaacaaagccttgcttgcaccagataatttgaagaaaaaagggaaggtgtgtaccatcgctgaggttgaggaagcaaaggctgttctgaggctgtttccaatatgggctacatgcttgccatattctattgtatttgcacagtacactactttcttcaccaagcaaggtgctaccatggacagaactattgtgcccggttttgacataccggctgcttcacttcagtcatttatctgccttgccataataatgatcatacccatttatgaccgcatttttgttccaatggcaagagctttcaccagagaaccctctggcattacaatgctacaaagaatcggaactgggatgtttttctctatcatatctatggtcgttgcagctttagttgagatgaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

330

Amino Acids

36.75

Weight (kDa)

6.62

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 198
AciI CCGC 1 cut(s) 865
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 3 cut(s) 522, 573, 800
AfaI GTAC 3 cut(s) 302, 646, 737
AfiI CCNNNNNNNGG 2 cut(s) 40, 466
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 3 cut(s) 155, 292, 625
AhlI ACTAGT 1 cut(s) 530
AluBI AGCT 6 cut(s) 151, 282, 369, 548, 890, 977
AluI AGCT 6 cut(s) 151, 282, 369, 548, 890, 977
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 509, 806, 974
ApoI RAATTY 1 cut(s) 387
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
AsiGI ACCGGT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 789
AsuHPI GGTGA 2 cut(s) 742, 886
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 789
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 3 cut(s) 496, 793, 986
BccI CCATC 3 cut(s) 242, 397, 656
BclI TGATCA 2 cut(s) 580, 846
BcnI CCSGG 1 cut(s) 789
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 3 cut(s) 185, 438, 531
BisI GCNGC 3 cut(s) 510, 807, 975
BlsI GCNGC 3 cut(s) 511, 808, 976
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 571, 590
BmrFI CCNGG 1 cut(s) 789
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 948
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 460, 565, 768
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 466
Bse118I RCCGGY 2 cut(s) 447, 802
Bse1I ACTGG 3 cut(s) 260, 527, 943
BseDI CCNNGG 3 cut(s) 460, 565, 768
BseGI GGATG 3 cut(s) 10, 456, 948
BseLI CCNNNNNNNGG 2 cut(s) 40, 466
BseMII CTCAG 4 cut(s) 138, 351, 645, 671
BseNI ACTGG 3 cut(s) 260, 527, 943
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 789
BseXI GCAGC 3 cut(s) 496, 793, 986
BseYI CCCAGC 1 cut(s) 369
BshFI GGCC 1 cut(s) 131
BshTI ACCGGT 1 cut(s) 447
BsiSI CCGG 3 cut(s) 448, 789, 803
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 40, 466
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 4 cut(s) 238, 256, 580, 846
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 1 cut(s) 865
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 4 cut(s) 139, 350, 646, 672
BspLI GGNNCC 2 cut(s) 571, 590
BspPI GGATC 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 447, 802
BsrI ACTGG 3 cut(s) 260, 527, 943
BssAI RCCGGY 2 cut(s) 447, 802
BssECI CCNNGG 3 cut(s) 460, 565, 768
BssMI GATC 4 cut(s) 238, 256, 580, 846
BssT1I CCWWGG 2 cut(s) 460, 768
Bst4CI ACNGT 2 cut(s) 124, 735
Bst6I CTCTTC 2 cut(s) 5, 549
BstC8I GCNNGC 3 cut(s) 319, 609, 710
BstDEI CTNAG 6 cut(s) 47, 147, 337, 365, 654, 680
BstDSI CCRYGG 2 cut(s) 565, 768
BstF5I GGATG 3 cut(s) 10, 456, 948
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 4 cut(s) 241, 259, 583, 849
BstMBI GATC 4 cut(s) 238, 256, 580, 846
BstMWI GCNNNNNNNGC 2 cut(s) 233, 608
BstNSI RCATGY 2 cut(s) 73, 708
BstSCI CCNGG 1 cut(s) 787
BstSLI GKGCMC 1 cut(s) 789
BstV1I GCAGC 3 cut(s) 496, 793, 986
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 2 cut(s) 565, 768
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 3 cut(s) 10, 456, 948
BtsIMutI CAGTG 3 cut(s) 267, 413, 436
Cac8I GCNNGC 3 cut(s) 319, 609, 710
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 2 cut(s) 447, 802
Cfr13I GGNCC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 301, 645, 736
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 3 cut(s) 70, 705, 769
CviQI GTAC 3 cut(s) 301, 645, 736
DdeI CTNAG 6 cut(s) 47, 147, 337, 365, 654, 680
DpnI GATC 4 cut(s) 240, 258, 582, 848
DpnII GATC 4 cut(s) 238, 256, 580, 846
Eam1104I CTCTTC 2 cut(s) 5, 549
EarI CTCTTC 2 cut(s) 5, 549
Eco130I CCWWGG 2 cut(s) 460, 768
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 3 cut(s) 522, 573, 800
EcoRI GAATTC 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 460, 768
ErhI CCWWGG 2 cut(s) 460, 768
FaeI CATG 3 cut(s) 73, 708, 772
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 1 cut(s) 120
FatI CATG 3 cut(s) 69, 704, 768
FbaI TGATCA 2 cut(s) 580, 846
Fnu4HI GCNGC 3 cut(s) 510, 807, 975
FokI GGATG 3 cut(s) 17, 443, 955
Fsp4HI GCNGC 3 cut(s) 510, 807, 975
FspBI CTAG 3 cut(s) 185, 438, 531
FspI TGCGCA 1 cut(s) 198
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 510, 807, 975
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 1 cut(s) 131
HapII CCGG 3 cut(s) 448, 789, 803
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 73, 708, 772
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 3 cut(s) 108, 560, 930
HpaII CCGG 3 cut(s) 448, 789, 803
HphI GGTGA 2 cut(s) 742, 886
Hpy166II GTNNAC 5 cut(s) 85, 120, 206, 645, 738
Hpy188I TCNGA 7 cut(s) 21, 28, 35, 148, 553, 681, 935
Hpy8I GTNNAC 5 cut(s) 85, 120, 206, 645, 738
HpyAV CCTTC 2 cut(s) 546, 631
HpyCH4III ACNGT 2 cut(s) 124, 735
HpyCH4V TGCA 8 cut(s) 69, 270, 317, 413, 512, 611, 731, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 608
HpyF3I CTNAG 6 cut(s) 47, 147, 337, 365, 654, 680
Hsp92II CATG 3 cut(s) 73, 708, 772
HspAI GCGC 1 cut(s) 197
Ksp22I TGATCA 2 cut(s) 580, 846
Kzo9I GATC 4 cut(s) 238, 256, 580, 846
Lsp1109I GCAGC 3 cut(s) 496, 793, 986
LweI GCATC 1 cut(s) 465
MaeI CTAG 3 cut(s) 185, 438, 531
MalI GATC 4 cut(s) 240, 258, 582, 848
MboI GATC 4 cut(s) 238, 256, 580, 846
MboII GAAGA 8 cut(s) 22, 135, 160, 163, 280, 566, 637, 739
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 789
MluCI AATT 4 cut(s) 292, 387, 489, 619
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 9 cut(s) 97, 460, 463, 550, 602, 649, 655, 675, 916
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 3 cut(s) 842, 917, 962
MspI CCGG 3 cut(s) 448, 789, 803
MspR9I CCNGG 1 cut(s) 789
MunI CAATTG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 233, 608
NciI CCSGG 1 cut(s) 789
NcoI CCATGG 1 cut(s) 768
NdeII GATC 4 cut(s) 238, 256, 580, 846
NlaIII CATG 3 cut(s) 73, 708, 772
NlaIV GGNNCC 2 cut(s) 571, 590
NmeAIII GCCGAG 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 198
NspI RCATGY 2 cut(s) 73, 708
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 560, 930
PflFI GACNNNGTC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 3 cut(s) 511, 808, 976
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 571, 590
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 3 cut(s) 302, 646, 737
RsaNI GTAC 3 cut(s) 301, 645, 736
RseI CAYNNNNRTG 3 cut(s) 842, 917, 962
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 3 cut(s) 510, 807, 975
Sau3AI GATC 4 cut(s) 238, 256, 580, 846
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 789
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 1 cut(s) 465
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 3 cut(s) 842, 917, 962
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 4 cut(s) 292, 387, 489, 619
SsiI CCGC 1 cut(s) 865
SspMI CTAG 3 cut(s) 185, 438, 531
StyD4I CCNGG 1 cut(s) 787
StyI CCWWGG 2 cut(s) 460, 768
TaaI ACNGT 2 cut(s) 124, 735
TasI AATT 4 cut(s) 292, 387, 489, 619
TatI WGTACW 1 cut(s) 735
TfiI GAWTC 2 cut(s) 560, 930
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 3 cut(s) 267, 420, 436
TseI GCWGC 3 cut(s) 509, 806, 974
TspDTI ATGAA 2 cut(s) 113, 326
TspRI CASTG 3 cut(s) 267, 420, 436
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 387
XceI RCATGY 2 cut(s) 73, 708
XspI CTAG 3 cut(s) 185, 438, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.