Rroxscaffold_3G00231820

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000191
Physical Location & Seq
Forward (+)
17219989 .. 17220878
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231820.1

Sequence Viewer

Length: 261 bp
ATGGCTCCTAACACCCAAAACACCCCATTGTTAGATCACGACATTGAGGTTGCCGTTTCAGAATCCAAAGCCTCTTCCTCCCCAACCGCCATCAGATCCTCCACTACCGGCAGCTGGCGGTCCACCTCGTTTATAATAGGGGTGGGATTTGCAGAGATGTTTGAGTTCTATGGAGTCAGCTCGAACCCCATAACGTTCCTGAGTGGGTCATTGGGGGAGTCAACGGCGACGGCGGCGGTGAACGTGAACACGTGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

86

Amino Acids

9.02

Weight (kDa)

4.49

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AciI CCGC 4 cut(s) 87, 118, 233, 236
AclI AACGTT 1 cut(s) 194
AclWI GGATC 1 cut(s) 90
AcvI CACGTG 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 249
AluBI AGCT 2 cut(s) 114, 180
AluI AGCT 2 cut(s) 114, 180
AlwI GGATC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 252
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 98
BceAI ACGGC 3 cut(s) 38, 240, 246
BisI GCNGC 2 cut(s) 112, 234
BlsI GCNGC 2 cut(s) 113, 235
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 114
Bsp143I GATC 2 cut(s) 34, 95
BspACI CCGC 4 cut(s) 87, 118, 233, 236
BspCNI CTCAG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 2 cut(s) 34, 95
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 2 cut(s) 37, 98
BstMBI GATC 2 cut(s) 34, 95
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 120
CviAII CATG 1 cut(s) 258
CviJI RGCY 4 cut(s) 5, 71, 114, 180
CviKI_1 RGCY 4 cut(s) 5, 71, 114, 180
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 36, 97
DpnII GATC 2 cut(s) 34, 95
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 120
Eco72I CACGTG 1 cut(s) 252
FaeI CATG 1 cut(s) 261
FaiI YATR 4 cut(s) 134, 171, 191, 259
FatI CATG 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 112, 234
Fsp4HI GCNGC 2 cut(s) 112, 234
GluI GCNGC 2 cut(s) 112, 234
HapII CCGG 1 cut(s) 108
Hin1II CATG 1 cut(s) 261
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 3 cut(s) 62, 174, 218
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 4 cut(s) 123, 222, 241, 247
Hpy188I TCNGA 2 cut(s) 61, 95
Hpy188III TCNNGA 3 cut(s) 38, 199, 258
Hpy8I GTNNAC 4 cut(s) 123, 222, 241, 247
Hpy99I CGWCG 1 cut(s) 232
HpyCH4IV ACGT 3 cut(s) 194, 243, 251
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 3 cut(s) 194, 243, 251
Hsp92II CATG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 34, 95
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 100, 121, 212
Lsp1109I GCAGC 1 cut(s) 123
MaeII ACGT 3 cut(s) 194, 243, 251
MalI GATC 2 cut(s) 36, 97
MboI GATC 2 cut(s) 34, 95
MboII GAAGA 1 cut(s) 66
MflI RGATCY 1 cut(s) 95
MlyI GAGTC 2 cut(s) 183, 227
MnlI CCTC 5 cut(s) 40, 82, 88, 109, 136
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 34, 95
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 257
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 113, 235
PleI GAGTC 2 cut(s) 182, 226
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 2 cut(s) 182, 226
Ppu21I YACGTR 1 cut(s) 252
PsiI TTATAA 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 194
PspCI CACGTG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 114
SatI GCNGC 2 cut(s) 112, 234
Sau3AI GATC 2 cut(s) 34, 95
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 183, 227
SetI ASST 7 cut(s) 51, 116, 128, 182, 197, 246, 254
SgeI CNNG 7 cut(s) 50, 120, 127, 139, 193, 211, 256
SinI GGWCC 1 cut(s) 120
SsiI CCGC 4 cut(s) 87, 118, 233, 236
TaiI ACGT 3 cut(s) 197, 246, 254
TaqI TCGA 1 cut(s) 182
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 62
TseI GCWGC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.