pycom05g17900

Peptide transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
21019704 .. 21020294
591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17900.1

Sequence Viewer

Length: 354 bp
ATGGCGACCGTTGAAGAGAAAGGCTTAGAAGACGATCACACACAAGATGGGACTGTGGATCTCAAAGGTAGACCAGTTTTAAGATCAAATACTGGGAGATGGAGAGCTTGTTCCTTCATTGTAGGGTATGAAGTGTTTGAGAGGATGGCATACTATGGAATTGCATCAAACTTGGTGATTTATTTGACAACGAAGCTGCATGAAGGCACAGTTACCTCTGCAAACAATGTTACCAACTGGGTTGGCACTGTTTGGATGACACCGCTTTTGGGAGCCTATATAGCAGATGCTTATCTTGGTCGATATTGGACTTTTGTTATTGCTTCAGCCATATATCTTGTGGTACAAAATTAA

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

5.56

Isoelectric Point (pI)

16.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 70
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 14
AloI GAACNNNNNNTCC 2 cut(s) 94, 126
AluBI AGCT 2 cut(s) 107, 196
AluI AGCT 2 cut(s) 107, 196
AlwI GGATC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AsuHPI GGTGA 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 183
BccI CCATC 3 cut(s) 41, 93, 139
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 274
BmrI ACTGGG 2 cut(s) 102, 247
BmsI GCATC 2 cut(s) 173, 277
BmuI ACTGGG 2 cut(s) 102, 247
BpiI GAAGAC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 74, 97, 242
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 2 cut(s) 150, 261
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 3 cut(s) 74, 97, 242
BseXI GCAGC 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 34, 58, 83
BspACI CCGC 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 66
BsrI ACTGG 3 cut(s) 74, 97, 242
BssMI GATC 3 cut(s) 34, 58, 83
Bst4CI ACNGT 4 cut(s) 10, 55, 211, 250
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 150, 261
BstKTI GATC 3 cut(s) 37, 61, 86
BstMBI GATC 3 cut(s) 34, 58, 83
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BtsCI GGATG 2 cut(s) 150, 261
BtsIMutI CAGTG 1 cut(s) 246
Csp6I GTAC 1 cut(s) 344
CviAII CATG 1 cut(s) 200
CviJI RGCY 5 cut(s) 24, 107, 196, 275, 329
CviKI_1 RGCY 5 cut(s) 24, 107, 196, 275, 329
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 1 cut(s) 25
DpnI GATC 3 cut(s) 36, 60, 85
DpnII GATC 3 cut(s) 34, 58, 83
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 309
FaeI CATG 1 cut(s) 203
FaiI YATR 8 cut(s) 129, 151, 156, 201, 279, 281, 332, 334
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 2 cut(s) 157, 268
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 203
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 124, 197
HpyCH4III ACNGT 4 cut(s) 10, 55, 211, 250
HpyCH4V TGCA 3 cut(s) 164, 199, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 25
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 3 cut(s) 34, 58, 83
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 3 cut(s) 78, 87, 223
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 173, 277
MaeIII GTNAC 2 cut(s) 211, 229
MalI GATC 3 cut(s) 36, 60, 85
MboI GATC 3 cut(s) 34, 58, 83
MboII GAAGA 2 cut(s) 26, 41
MflI RGATCY 1 cut(s) 58
MluCI AATT 2 cut(s) 159, 349
MnlI CCTC 2 cut(s) 135, 226
MseI TTAA 2 cut(s) 80, 352
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 3 cut(s) 34, 58, 83
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 80, 352
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 34, 58, 83
SetI ASST 4 cut(s) 70, 109, 198, 218
SfaNI GCATC 2 cut(s) 173, 277
SgeI CNNG 9 cut(s) 56, 86, 105, 120, 184, 212, 250, 308, 350
Sse9I AATT 2 cut(s) 159, 349
SsiI CCGC 1 cut(s) 263
TaaI ACNGT 4 cut(s) 10, 55, 211, 250
TaqI TCGA 1 cut(s) 301
TasI AATT 2 cut(s) 159, 349
Tru1I TTAA 2 cut(s) 80, 352
Tru9I TTAA 2 cut(s) 80, 352
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 106, 144, 216
TspRI CASTG 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.