Rmu_sc0005026.1_g000018

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005026.1
OG0000191
Physical Location & Seq
Forward (+)
58303 .. 60193
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005026.1_g000018.1.cds

Sequence Viewer

Length: 1110 bp
atgaatgcaggcatactattgacattctcagtattgatctacatacaggacaatctaagctggggtctgggttttggaattccttgtgttgtgatggtccttgcaatgattatttttgtcagcggaactaggacataccggtatagcatcaaaggggaggaggaaagcccatttgtgagaattggcaaggtttttcttgctgcattaaggaaccggcgaacttgtctttcagcaatagcttctgaagaggaatcccgtggaaccttgcctgatcaaagttctgaacaattcaagtttctcaacaaagccttgcttgcaccagataatttgaagaaaaacgggaaggtgtgtaccatcactgaggttgaggaagcaaaggctgtcctgaggctgtttccaatatgggctacatgcttgccatttgctattgtatgtgcacagtccagtacattcttcaccaagcaaggtgctaccatggacagaactattgtgcccggttttgacattccagctgcttcacttcagtcatttatctgccttgccataatgatgatcgtacccatttatgaccgcatttttgttccaatggcaagagctttcaccagagaaccctttggaattacaatgctacaaagaatcggaactgggatgtttttctctatcatatctatggtcgttgcagctttagttgagatgaaaaggctccaaactgccaaagattatgatctggttgatctgccaagtgccacaattccaatgagtatttggtggttggttcctcagtactttttgtatggactatccgatgttttcaccattgttggtctacaagagttcttctataatcaggtaccaaatgaattaagaagcatgggacttgctctctacctcagtatatttggtgtgggaaactttctgagtagctttcttatctttattattgaggaagcaaccagttggggaggccacactagctggttttccgacaaccttaatcttgcacatcttgattacttttactggttactagcagcactctgtggagtaggattgttggcctacatgtattttgcaaaatcttacatttacaatagggctagtacaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

369

Amino Acids

41.42

Weight (kDa)

6.74

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 850
AccI GTMKAC 1 cut(s) 826
AciI CCGC 2 cut(s) 123, 571
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 264, 506
AdeI CACNNNGTG 1 cut(s) 1040
AfaI GTAC 6 cut(s) 352, 448, 558, 785, 852, 1102
AflIII ACRYGT 1 cut(s) 1062
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 292, 331
AluBI AGCT 7 cut(s) 60, 239, 512, 596, 683, 924, 975
AluI AGCT 7 cut(s) 60, 239, 512, 596, 683, 924, 975
Alw21I GWGCWC 1 cut(s) 439
Alw44I GTGCAC 1 cut(s) 435
AoxI GGCC 2 cut(s) 964, 1056
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 4 cut(s) 200, 512, 680, 1031
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AsiGI ACCGGT 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 850
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 3 cut(s) 448, 592, 805
AvaII GGWCC 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 386
BaeGI GKGCMC 2 cut(s) 439, 495
BanI GGYRCC 1 cut(s) 850
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 4 cut(s) 187, 499, 692, 1043
BccI CCATC 2 cut(s) 88, 362
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 495
BfaI CTAG 4 cut(s) 129, 972, 1028, 1098
BisI GCNGC 4 cut(s) 201, 513, 681, 1032
BlsI GCNGC 4 cut(s) 202, 514, 682, 1033
BmcAI AGTACT 1 cut(s) 785
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 5 cut(s) 212, 262, 704, 777, 852
BmrFI CCNGG 1 cut(s) 495
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 723
BsaJI CCNNGG 2 cut(s) 256, 474
BsaWI WCCGGW 1 cut(s) 138
Bse118I RCCGGY 2 cut(s) 138, 213
Bse1I ACTGG 4 cut(s) 444, 649, 954, 1025
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 723
BseDI CCNNGG 2 cut(s) 256, 474
BseGI GGATG 1 cut(s) 654
BseJI GATNNNNATC 1 cut(s) 723
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 6 cut(s) 42, 351, 377, 794, 904, 908
BseNI ACTGG 4 cut(s) 444, 649, 954, 1025
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 2 cut(s) 439, 495
BseXI GCAGC 4 cut(s) 187, 499, 692, 1043
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 2 cut(s) 966, 1058
BshNI GGYRCC 1 cut(s) 850
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 3 cut(s) 139, 214, 495
BslFI GGGAC 1 cut(s) 888
BsmFI GGGAC 1 cut(s) 888
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 966, 1058
Bsp1286I GDGCHC 2 cut(s) 439, 495
Bsp143I GATC 5 cut(s) 36, 271, 552, 724, 733
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 2 cut(s) 123, 571
BspANI GGCC 2 cut(s) 966, 1058
BspCNI CTCAG 6 cut(s) 41, 352, 378, 793, 903, 909
BspLI GGNNCC 5 cut(s) 212, 262, 704, 777, 852
BspT107I GGYRCC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 138, 213
BsrI ACTGG 4 cut(s) 444, 649, 954, 1025
BssAI RCCGGY 2 cut(s) 138, 213
BssECI CCNNGG 2 cut(s) 256, 474
BssMI GATC 5 cut(s) 36, 271, 552, 724, 733
BssT1I CCWWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 10, 315, 416
BstDEI CTNAG 7 cut(s) 28, 56, 360, 386, 780, 890, 917
BstDSI CCRYGG 2 cut(s) 256, 474
BstF5I GGATG 1 cut(s) 654
BstKTI GATC 5 cut(s) 39, 274, 555, 727, 736
BstMBI GATC 5 cut(s) 36, 271, 552, 724, 733
BstMWI GCNNNNNNNGC 2 cut(s) 314, 972
BstNSI RCATGY 2 cut(s) 414, 1066
BstSCI CCNGG 1 cut(s) 493
BstSLI GKGCMC 2 cut(s) 439, 495
BstV1I GCAGC 4 cut(s) 187, 499, 692, 1043
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 2 cut(s) 966, 1058
BtgI CCRYGG 2 cut(s) 256, 474
BtsCI GGATG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 10, 315, 416
Cfr10I RCCGGY 2 cut(s) 138, 213
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 6 cut(s) 351, 447, 557, 784, 851, 1101
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 4 cut(s) 411, 475, 871, 1063
CviQI GTAC 6 cut(s) 351, 447, 557, 784, 851, 1101
DdeI CTNAG 7 cut(s) 28, 56, 360, 386, 780, 890, 917
DpnI GATC 5 cut(s) 38, 273, 554, 726, 735
DpnII GATC 5 cut(s) 36, 271, 552, 724, 733
DraIII CACNNNGTG 1 cut(s) 1040
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 264, 506
Eco81I CCTNAGG 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 4 cut(s) 414, 478, 874, 1066
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 1 cut(s) 888
FatI CATG 4 cut(s) 410, 474, 870, 1062
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 4 cut(s) 201, 513, 681, 1032
FokI GGATG 1 cut(s) 661
Fsp4HI GCNGC 4 cut(s) 201, 513, 681, 1032
FspBI CTAG 4 cut(s) 129, 972, 1028, 1098
GluI GCNGC 4 cut(s) 201, 513, 681, 1032
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 2 cut(s) 966, 1058
HapII CCGG 3 cut(s) 139, 214, 495
Hin1II CATG 4 cut(s) 414, 478, 874, 1066
HinfI GANTC 2 cut(s) 251, 636
HpaII CCGG 3 cut(s) 139, 214, 495
HphI GGTGA 3 cut(s) 448, 592, 805
Hpy166II GTNNAC 3 cut(s) 351, 437, 827
Hpy188I TCNGA 6 cut(s) 244, 283, 641, 805, 918, 985
Hpy188III TCNNGA 2 cut(s) 385, 1007
Hpy8I GTNNAC 3 cut(s) 351, 437, 827
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4V TGCA 8 cut(s) 8, 104, 203, 317, 437, 680, 1001, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 972
HpyF3I CTNAG 7 cut(s) 28, 56, 360, 386, 780, 890, 917
Hsp92II CATG 4 cut(s) 414, 478, 874, 1066
KpnI GGTACC 1 cut(s) 854
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 5 cut(s) 36, 271, 552, 724, 733
LmnI GCTCC 1 cut(s) 708
Lsp1109I GCAGC 4 cut(s) 187, 499, 692, 1043
LweI GCATC 1 cut(s) 156
MaeI CTAG 4 cut(s) 129, 972, 1028, 1098
MaeIII GTNAC 1 cut(s) 1023
MalI GATC 5 cut(s) 38, 273, 554, 726, 735
MboI GATC 5 cut(s) 36, 271, 552, 724, 733
MboII GAAGA 4 cut(s) 257, 343, 445, 829
MhlI GDGCHC 2 cut(s) 439, 495
MluCI AATT 7 cut(s) 78, 180, 287, 325, 618, 750, 860
MmeI TCCRAC 1 cut(s) 1008
MseI TTAA 3 cut(s) 206, 863, 993
MslI CAYNNNNRTG 2 cut(s) 548, 668
MspA1I CMGCKG 2 cut(s) 123, 512
MspI CCGG 3 cut(s) 139, 214, 495
MspR9I CCNGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 314, 972
NciI CCSGG 1 cut(s) 495
NcoI CCATGG 1 cut(s) 474
NdeII GATC 5 cut(s) 36, 271, 552, 724, 733
NlaIII CATG 4 cut(s) 414, 478, 874, 1066
NlaIV GGNNCC 5 cut(s) 212, 262, 704, 777, 852
NspI RCATGY 2 cut(s) 414, 1066
PciI ACATGT 1 cut(s) 1062
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 251, 636
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 4 cut(s) 202, 514, 682, 1033
PscI ACATGT 1 cut(s) 1062
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 5 cut(s) 212, 262, 704, 777, 852
PspPI GGNCC 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 6 cut(s) 352, 448, 558, 785, 852, 1102
RsaNI GTAC 6 cut(s) 351, 447, 557, 784, 851, 1101
RseI CAYNNNNRTG 2 cut(s) 548, 668
SaqAI TTAA 3 cut(s) 206, 863, 993
SatI GCNGC 4 cut(s) 201, 513, 681, 1032
Sau3AI GATC 5 cut(s) 36, 271, 552, 724, 733
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 785
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 2 cut(s) 439, 495
SfaNI GCATC 1 cut(s) 156
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 548, 668
Sse9I AATT 7 cut(s) 78, 180, 287, 325, 618, 750, 860
SsiI CCGC 2 cut(s) 123, 571
SspMI CTAG 4 cut(s) 129, 972, 1028, 1098
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 441
TasI AATT 7 cut(s) 78, 180, 287, 325, 618, 750, 860
TatI WGTACW 3 cut(s) 446, 783, 1100
TfiI GAWTC 2 cut(s) 251, 636
Tru1I TTAA 3 cut(s) 206, 863, 993
Tru9I TTAA 3 cut(s) 206, 863, 993
TscAI CASTG 1 cut(s) 364
TseI GCWGC 4 cut(s) 200, 512, 680, 1031
TspDTI ATGAA 3 cut(s) 17, 710, 873
TspRI CASTG 1 cut(s) 364
VneI GTGCAC 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 78
XceI RCATGY 2 cut(s) 414, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmiI GTMKAC 1 cut(s) 826
XspI CTAG 4 cut(s) 129, 972, 1028, 1098
ZrmI AGTACT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.