Rh7AG396400

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000191
Physical Location & Seq
Reverse (-)
51896280 .. 51902585
6306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG396400.1

Sequence Viewer

Length: 408 bp
ATGGCTACATCTCTCGAAGAATCTCCGGAGACCCAAACTCCACTCCTAGGCGACGTCGTAGACGGCGCCGTTGACTACAAAGGGCATCCGGTCCTCAGATCCACCTCAGGCGGTTGGCTTTCCGCATCGTTCATAATAGGGGTGGAAATTGCGGAGAGATTCGCCTACTATGGGATTAGCTCGAATCTGATAACGTTTCTGACGGGGCCGTTGGGACAGTCGACGGCGACGGCGGCCGAGAATGTGAACATATGGTCCGGAACTTCTCAGTTGCTTCCTCTATTGGGAGCATTCGTGGCGGATTCTTTTCTGGGTCGCTACCGCACCATTATTGTTGCTTCTCTCCTCTACATTTTGGTCTGTCCCTTTCACCCCTTTGTTTTTTTGTTTCCTTTTTCCGCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

135

Amino Acids

14.49

Weight (kDa)

4.67

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 401
AccI GTMKAC 2 cut(s) 60, 221
AccIII TCCGGA 2 cut(s) 25, 257
AciI CCGC 7 cut(s) 111, 123, 152, 233, 299, 322, 399
AclI AACGTT 1 cut(s) 194
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 2 cut(s) 54, 66
AfiI CCNNNNNNNGG 3 cut(s) 47, 171, 284
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 93
Aor13HI TCCGGA 2 cut(s) 25, 257
AoxI GGCC 2 cut(s) 206, 234
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 3 cut(s) 91, 206, 255
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 2 cut(s) 91, 255
AvrII CCTAGG 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 106
BanI GGYRCC 1 cut(s) 65
BceAI ACGGC 5 cut(s) 53, 79, 193, 240, 246
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 404
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 234
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 91, 255
BmgT120I GGNCC 3 cut(s) 91, 206, 255
BmiI GGNNCC 2 cut(s) 67, 207
BmsI GCATC 2 cut(s) 94, 134
BsaHI GRCGYC 2 cut(s) 54, 66
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 3 cut(s) 25, 88, 257
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 279, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 171, 284
Bse21I CCTNAGG 1 cut(s) 106
BseAI TCCGGA 2 cut(s) 25, 257
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 47, 171, 284
BseMII CTCAG 3 cut(s) 109, 120, 281
BseRI GAGGAG 1 cut(s) 335
BseX3I CGGCCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 208, 236
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 26, 89, 258
BslFI GGGAC 2 cut(s) 228, 348
BslI CCNNNNNNNGG 3 cut(s) 47, 171, 284
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 228, 348
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 208, 236
Bso31I GGTCTC 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 25, 257
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 7 cut(s) 111, 123, 152, 233, 299, 322, 399
BspANI GGCC 2 cut(s) 208, 236
BspCNI CTCAG 3 cut(s) 108, 119, 280
BspEI TCCGGA 2 cut(s) 25, 257
BspLI GGNNCC 2 cut(s) 67, 207
BspPI GGATC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 98
BssNI GRCGYC 2 cut(s) 54, 66
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 2 cut(s) 54, 66
BstDEI CTNAG 3 cut(s) 95, 106, 267
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 98
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 233, 296
BstSFI CTRYAG 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BstZI CGGCCG 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 106
BsuRI GGCC 2 cut(s) 208, 236
BtsCI GGATG 1 cut(s) 85
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 91, 206, 255
CviJI RGCY 5 cut(s) 5, 118, 180, 208, 236
CviKI_1 RGCY 5 cut(s) 5, 118, 180, 208, 236
DdeI CTNAG 3 cut(s) 95, 106, 267
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
EciI GGCGGA 1 cut(s) 314
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 91, 255
Eco52I CGGCCG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 46
FaiI YATR 4 cut(s) 134, 171, 251, 253
FaqI GGGAC 2 cut(s) 228, 348
FauNDI CATATG 1 cut(s) 251
FblI GTMKAC 2 cut(s) 60, 221
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 208, 236
HapII CCGG 3 cut(s) 26, 89, 258
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 2 cut(s) 54, 66
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 73, 222
HindII GTYRAC 2 cut(s) 73, 222
HinfI GANTC 4 cut(s) 20, 159, 184, 302
HpaII CCGG 3 cut(s) 26, 89, 258
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 4 cut(s) 61, 73, 222, 247
Hpy188I TCNGA 3 cut(s) 98, 189, 201
Hpy188III TCNNGA 3 cut(s) 14, 26, 258
Hpy8I GTNNAC 4 cut(s) 61, 73, 222, 247
Hpy99I CGWCG 4 cut(s) 56, 59, 226, 232
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 54, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 296
HpyF3I CTNAG 3 cut(s) 95, 106, 267
HpySE526I ACGT 2 cut(s) 54, 194
Hsp92I GRCGYC 2 cut(s) 54, 66
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 2 cut(s) 25, 257
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 39, 93, 102, 271, 296
LweI GCATC 2 cut(s) 94, 134
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 54, 194
MalI GATC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 401
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 98
MluCI AATT 1 cut(s) 147
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 4 cut(s) 104, 115, 288, 356
MroI TCCGGA 2 cut(s) 25, 257
MspI CCGG 3 cut(s) 26, 89, 258
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 233, 296
NarI GGCGCC 1 cut(s) 66
NdeI CATATG 1 cut(s) 251
NdeII GATC 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 67, 207
NmeAIII GCCGAG 1 cut(s) 262
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 4 cut(s) 20, 159, 184, 302
PkrI GCNGC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 67, 207
PspPI GGNCC 3 cut(s) 91, 206, 255
PsuI RGATCY 1 cut(s) 98
SalI GTCGAC 1 cut(s) 220
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 3 cut(s) 91, 206, 255
SetI ASST 4 cut(s) 57, 107, 182, 197
SfaNI GCATC 2 cut(s) 94, 134
SfcI CTRYAG 1 cut(s) 404
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 2 cut(s) 91, 255
Sse9I AATT 1 cut(s) 147
SsiI CCGC 7 cut(s) 111, 123, 152, 233, 299, 322, 399
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 57, 197
TaqI TCGA 3 cut(s) 15, 182, 221
TasI AATT 1 cut(s) 147
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 4 cut(s) 20, 159, 184, 302
TspDTI ATGAA 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 91, 255
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 2 cut(s) 60, 221
XspI CTAG 1 cut(s) 47
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.