Rmu_sc0000347.1_g000046

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000347.1
OG0000191
Physical Location & Seq
Forward (+)
155269 .. 159175
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000347.1_g000046.1.cds

Sequence Viewer

Length: 1254 bp
atggacaagatccagaggagtgcaaagcgaaaagctcattcttcaattggtggtactttggacaatctaagctggggtctgggttttggaattccttgtgttgtgatggtccttgcaatgattatttttgtcagcggaactaggacataccggtatagcatcaaaggggaggaggaaagcccatttgtgagaattggcaaggtttttgttgctgcattaaggaaccggcgaactagtccttcagcaatagcttctgaagaggaatcccgtggaaccttgcctgatcaaagttctgaacaattcaagtttctcaacaaagccttgcttgcaccagataatttgaagaaaaacgggaaggtgtgtaccatcactgaggttgaggaagcaaaggctgtcctgaggctgtttccaatatgggctacatgcttgccatttgctattgtatgtgcacagtctagtacattcttcaccaagcaaggtgctaccatggacagaactattgtgcccggttttgacgttccagctgcttcacttcagtcatttatctgccttgccataatgatgatcgtacccatttatgaccgcatttttgttccaatggcaagagctttcaccagagaaccctttggaattacaatgctacaaagaatcggaactgggatgtttttctctatcatatctatggtcgttgcagctttagttgagatgaaaaggctccaaactgccaaagattatgatctggttgatctgccaagtgccacaattccaatgagtatttggtggttggttcctcagtactttttgtatggactatccgatgttttcaccattgttggtctacaagagttcttctatgatcagccaccaccgccgatggctacttctccggagaaccaaactccgctgctagacgccgatggttacccttatttgactaggattcgtattctgcttctgaagcatccttcttggactaggttcctcaacaaagccttgcttgcaccagatgatttagagaaaaacaggaaggtgtgtaccatcgctgatgttgaggaagcaaaggctgttcttaggctgtttccaatatgggctacatgcttggcatgtgctattgtgtatgcacagtccactactttcttcaccaagcaaggtgctaccatggacagaactattgtgcccggttttgacataccagctgcttcacttcagacaagatgcagaacagatggcaatccaattcaaagagcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

417

Amino Acids

46.46

Weight (kDa)

8.98

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 838
AccIII TCCGGA 1 cut(s) 886
AciI CCGC 4 cut(s) 135, 583, 869, 902
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 5 cut(s) 225, 276, 518, 977, 1190
AcyI GRCGYC 1 cut(s) 912
AfaI GTAC 6 cut(s) 55, 364, 460, 570, 797, 1036
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 4 cut(s) 45, 304, 343, 1241
AhlI ACTAGT 1 cut(s) 233
AluBI AGCT 7 cut(s) 35, 72, 251, 524, 608, 695, 1196
AluI AGCT 7 cut(s) 35, 72, 251, 524, 608, 695, 1196
Alw21I GWGCWC 1 cut(s) 451
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 1 cut(s) 4
Aor13HI TCCGGA 1 cut(s) 886
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 5 cut(s) 212, 524, 692, 904, 1196
ApoI RAATTY 1 cut(s) 90
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AsiGI ACCGGT 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 2 cut(s) 507, 1179
AsuHPI GGTGA 4 cut(s) 460, 604, 817, 1132
AvaII GGWCC 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 398
BaeGI GKGCMC 3 cut(s) 451, 507, 1179
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 5 cut(s) 199, 511, 704, 891, 1183
BccI CCATC 6 cut(s) 100, 374, 868, 911, 1046, 1220
BclI TGATCA 2 cut(s) 283, 856
BcnI CCSGG 2 cut(s) 507, 1179
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 6 cut(s) 141, 234, 456, 908, 936, 975
BisI GCNGC 5 cut(s) 213, 525, 693, 905, 1197
BlsI GCNGC 5 cut(s) 214, 526, 694, 906, 1198
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 2 cut(s) 507, 1179
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 5 cut(s) 224, 274, 716, 789, 980
BmrFI CCNGG 2 cut(s) 507, 1179
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 168, 970, 1205
BmuI ACTGGG 1 cut(s) 666
BpuMI CCSGG 2 cut(s) 507, 1179
BsaBI GATNNNNATC 2 cut(s) 735, 1230
BsaHI GRCGYC 1 cut(s) 912
BsaJI CCNNGG 3 cut(s) 268, 486, 1158
BsaWI WCCGGW 2 cut(s) 150, 886
Bse118I RCCGGY 2 cut(s) 150, 225
Bse1I ACTGG 1 cut(s) 661
Bse21I CCTNAGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 2 cut(s) 735, 1230
BseAI TCCGGA 1 cut(s) 886
BseDI CCNNGG 3 cut(s) 268, 486, 1158
BseGI GGATG 2 cut(s) 666, 961
BseJI GATNNNNATC 2 cut(s) 735, 1230
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 3 cut(s) 363, 389, 806
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 2 cut(s) 31, 185
BseSI GKGCMC 3 cut(s) 451, 507, 1179
BseXI GCAGC 5 cut(s) 199, 511, 704, 891, 1183
BseYI CCCAGC 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 5 cut(s) 151, 226, 507, 887, 1179
Bsp1286I GDGCHC 3 cut(s) 451, 507, 1179
Bsp13I TCCGGA 1 cut(s) 886
Bsp143I GATC 6 cut(s) 9, 283, 564, 736, 745, 856
Bsp19I CCATGG 2 cut(s) 486, 1158
BspACI CCGC 4 cut(s) 135, 583, 869, 902
BspCNI CTCAG 3 cut(s) 364, 390, 805
BspEI TCCGGA 1 cut(s) 886
BspLI GGNNCC 5 cut(s) 224, 274, 716, 789, 980
BspPI GGATC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 2 cut(s) 150, 225
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 2 cut(s) 150, 225
BssECI CCNNGG 3 cut(s) 268, 486, 1158
BssMI GATC 6 cut(s) 9, 283, 564, 736, 745, 856
BssNI GRCGYC 1 cut(s) 912
BssT1I CCWWGG 2 cut(s) 486, 1158
Bst4CI ACNGT 2 cut(s) 453, 1125
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 912
BstC8I GCNNGC 3 cut(s) 327, 428, 999
BstDEI CTNAG 5 cut(s) 68, 372, 398, 792, 1070
BstDSI CCRYGG 3 cut(s) 268, 486, 1158
BstEII GGTNACC 1 cut(s) 920
BstF5I GGATG 2 cut(s) 666, 961
BstKTI GATC 6 cut(s) 12, 286, 567, 739, 748, 859
BstMBI GATC 6 cut(s) 9, 283, 564, 736, 745, 856
BstMWI GCNNNNNNNGC 4 cut(s) 326, 868, 958, 998
BstNSI RCATGY 3 cut(s) 426, 1098, 1107
BstPI GGTNACC 1 cut(s) 920
BstSCI CCNGG 2 cut(s) 505, 1177
BstSLI GKGCMC 3 cut(s) 451, 507, 1179
BstV1I GCAGC 5 cut(s) 199, 511, 704, 891, 1183
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 398
BtgI CCRYGG 3 cut(s) 268, 486, 1158
BtgZI GCGATG 1 cut(s) 1024
BtsCI GGATG 2 cut(s) 666, 961
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 327, 428, 999
Cfr10I RCCGGY 2 cut(s) 150, 225
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 920
Csp6I GTAC 6 cut(s) 54, 363, 459, 569, 796, 1035
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 5 cut(s) 423, 487, 1095, 1104, 1159
CviQI GTAC 6 cut(s) 54, 363, 459, 569, 796, 1035
DdeI CTNAG 5 cut(s) 68, 372, 398, 792, 1070
DpnI GATC 6 cut(s) 11, 285, 566, 738, 747, 858
DpnII GATC 6 cut(s) 9, 283, 564, 736, 745, 856
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 486, 1158
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 5 cut(s) 225, 276, 518, 977, 1190
Eco81I CCTNAGG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 920
EcoO65I GGTNACC 1 cut(s) 920
EcoRI GAATTC 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 486, 1158
ErhI CCWWGG 2 cut(s) 486, 1158
FaeI CATG 5 cut(s) 426, 490, 1098, 1107, 1162
FalI AAGNNNNNCTT 5 cut(s) 309, 341, 981, 1013, 1234
FatI CATG 5 cut(s) 422, 486, 1094, 1103, 1158
FbaI TGATCA 2 cut(s) 283, 856
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 213, 525, 693, 905, 1197
FokI GGATG 2 cut(s) 673, 948
Fsp4HI GCNGC 5 cut(s) 213, 525, 693, 905, 1197
FspBI CTAG 6 cut(s) 141, 234, 456, 908, 936, 975
GluI GCNGC 5 cut(s) 213, 525, 693, 905, 1197
GsaI CCCAGC 1 cut(s) 76
HapII CCGG 5 cut(s) 151, 226, 507, 887, 1179
HgaI GACGC 1 cut(s) 920
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 5 cut(s) 426, 490, 1098, 1107, 1162
HinfI GANTC 3 cut(s) 263, 648, 940
HpaII CCGG 5 cut(s) 151, 226, 507, 887, 1179
HphI GGTGA 4 cut(s) 460, 604, 817, 1132
Hpy166II GTNNAC 5 cut(s) 363, 449, 839, 1035, 1128
Hpy188I TCNGA 6 cut(s) 256, 295, 653, 817, 957, 1209
Hpy188III TCNNGA 3 cut(s) 13, 397, 887
Hpy8I GTNNAC 5 cut(s) 363, 449, 839, 1035, 1128
HpyAV CCTTC 4 cut(s) 249, 349, 975, 1021
HpyCH4III ACNGT 2 cut(s) 453, 1125
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 9 cut(s) 23, 116, 215, 329, 449, 692, 1001, 1121, 1218
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 868, 958, 998
HpyF3I CTNAG 5 cut(s) 68, 372, 398, 792, 1070
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 5 cut(s) 426, 490, 1098, 1107, 1162
Kpn2I TCCGGA 1 cut(s) 886
Ksp22I TGATCA 2 cut(s) 283, 856
Kzo9I GATC 6 cut(s) 9, 283, 564, 736, 745, 856
LmnI GCTCC 1 cut(s) 720
Lsp1109I GCAGC 5 cut(s) 199, 511, 704, 891, 1183
LweI GCATC 3 cut(s) 168, 970, 1205
MaeI CTAG 6 cut(s) 141, 234, 456, 908, 936, 975
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 920
MalI GATC 6 cut(s) 11, 285, 566, 738, 747, 858
MboI GATC 6 cut(s) 9, 283, 564, 736, 745, 856
MboII GAAGA 6 cut(s) 33, 269, 355, 457, 841, 1129
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 3 cut(s) 451, 507, 1179
MluCI AATT 8 cut(s) 45, 90, 192, 299, 337, 630, 762, 1236
MroI TCCGGA 1 cut(s) 886
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 560, 680
MspA1I CMGCKG 4 cut(s) 135, 524, 904, 1196
MspI CCGG 5 cut(s) 151, 226, 507, 887, 1179
MspR9I CCNGG 2 cut(s) 507, 1179
MunI CAATTG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 326, 868, 958, 998
NciI CCSGG 2 cut(s) 507, 1179
NcoI CCATGG 2 cut(s) 486, 1158
NdeII GATC 6 cut(s) 9, 283, 564, 736, 745, 856
NlaIII CATG 5 cut(s) 426, 490, 1098, 1107, 1162
NlaIV GGNNCC 5 cut(s) 224, 274, 716, 789, 980
NspI RCATGY 3 cut(s) 426, 1098, 1107
PfeI GAWTC 3 cut(s) 263, 648, 940
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 5 cut(s) 214, 526, 694, 906, 1198
PspEI GGTNACC 1 cut(s) 920
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 5 cut(s) 224, 274, 716, 789, 980
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 2 cut(s) 524, 1196
RsaI GTAC 6 cut(s) 55, 364, 460, 570, 797, 1036
RsaNI GTAC 6 cut(s) 54, 363, 459, 569, 796, 1035
RseI CAYNNNNRTG 2 cut(s) 560, 680
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 5 cut(s) 213, 525, 693, 905, 1197
Sau3AI GATC 6 cut(s) 9, 283, 564, 736, 745, 856
Sau96I GGNCC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 507, 1179
SduI GDGCHC 3 cut(s) 451, 507, 1179
SfaNI GCATC 3 cut(s) 168, 970, 1205
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 560, 680
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 8 cut(s) 45, 90, 192, 299, 337, 630, 762, 1236
SsiI CCGC 4 cut(s) 135, 583, 869, 902
SspMI CTAG 6 cut(s) 141, 234, 456, 908, 936, 975
StyD4I CCNGG 2 cut(s) 505, 1177
StyI CCWWGG 2 cut(s) 486, 1158
TaaI ACNGT 2 cut(s) 453, 1125
TaiI ACGT 1 cut(s) 519
TasI AATT 8 cut(s) 45, 90, 192, 299, 337, 630, 762, 1236
TatI WGTACW 2 cut(s) 458, 795
TfiI GAWTC 3 cut(s) 263, 648, 940
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 376
TseI GCWGC 5 cut(s) 212, 524, 692, 904, 1196
TspDTI ATGAA 1 cut(s) 722
TspRI CASTG 1 cut(s) 376
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 90
XceI RCATGY 3 cut(s) 426, 1098, 1107
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 6 cut(s) 141, 234, 456, 908, 936, 975
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.