Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Forward (+)

15779277 .. 15779792

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1122800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCAGAAGATGATTTGCCCACCAAGGCAGCAGTAGCAGAAGAAAATAATGTGTATACCAAAGATGGAACTGTGGATTTTCGTGGAAACCCAGCAAAGAGAAATGAAACAGGAACCTGGAAAGCCTGCCCTTTTATCCTAGTATCGGTGTTATTGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

55

Amino Acids

5.96

Weight (kDa)

4.59

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	118
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	24
BssNAI	GTATAC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	41
BstZ17I	GTATAC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	127
CviJI	RGCY	1 cut(s)	125
CviKI_1	RGCY	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaiI	YATR	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	96, 103, 105, 130, 139
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	140
MboII	GAAGA	2 cut(s)	20, 53
MnlI	CCTC	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	115
SatI	GCNGC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	1 cut(s)	119
SgeI	CNNG	8 cut(s)	37, 95, 104, 123, 129, 130, 138, 152
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	73
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.