MD02G1288200.v1.1

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
34456763 .. 34458842
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1288200.v1.1.491

Sequence Viewer

Length: 294 bp
ATGCCAGAGGAAATGAGAAGCATGGGAGCAGCAGCATACCTCAGCGTTATAGGTGCTGGAAACTTCGTAAGCATTAGTATAATAACTGTGGTGCAAGTAATTAGCTCAAAGCATGGCGAAACATGGCTTAGTGACAATATCAATCGTGCCCACCTCGATTGCTTCTATTGGGTAATTGCCGCACTAAGCACTGTTAATTTTTTCATTTATGTGTGGATTGCTAAACGTTTCATATACAAAGAGTTTGAAACAGAAGGAACCGAGAAGCAGACAGAGCCGTCTCAATCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

5.22

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
AciI CCGC 1 cut(s) 180
AclI AACGTT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 29, 32
BaeGI GKGCMC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 41, 44
BceAI ACGGC 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 285
BisI GCNGC 3 cut(s) 30, 33, 180
BlsI GCNGC 3 cut(s) 31, 34, 181
BmiI GGNNCC 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 41
BseMII CTCAG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 2 cut(s) 41, 44
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 151
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 88, 193
BstDEI CTNAG 3 cut(s) 41, 128, 185
BstMAI GTCTC 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 41, 44
BtsIMutI CAGTG 1 cut(s) 189
CspCI CAANNNNNGTGG 2 cut(s) 140, 175
CviAII CATG 3 cut(s) 22, 113, 123
CviJI RGCY 3 cut(s) 105, 127, 277
CviKI_1 RGCY 3 cut(s) 105, 127, 277
DdeI CTNAG 3 cut(s) 41, 128, 185
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 3 cut(s) 25, 116, 126
FaiI YATR 9 cut(s) 23, 37, 50, 80, 114, 124, 210, 233, 235
FatI CATG 3 cut(s) 21, 112, 122
Fnu4HI GCNGC 3 cut(s) 30, 33, 180
Fsp4HI GCNGC 3 cut(s) 30, 33, 180
GluI GCNGC 3 cut(s) 30, 33, 180
Hin1II CATG 3 cut(s) 25, 116, 126
Hpy188III TCNNGA 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 2 cut(s) 88, 193
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 3 cut(s) 41, 128, 185
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 3 cut(s) 25, 116, 126
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 18, 42, 273
Lsp1109I GCAGC 2 cut(s) 41, 44
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 99, 174, 196
MnlI CCTC 2 cut(s) 50, 164
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 274
NlaIII CATG 3 cut(s) 25, 116, 126
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 31, 34, 181
Psp1406I AACGTT 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 30, 33, 180
SduI GDGCHC 1 cut(s) 151
SetI ASST 5 cut(s) 42, 55, 107, 156, 229
SgeI CNNG 9 cut(s) 17, 34, 69, 107, 125, 135, 158, 167, 274
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 3 cut(s) 99, 174, 196
SsiI CCGC 1 cut(s) 180
TaaI ACNGT 2 cut(s) 88, 193
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 156
TasI AATT 3 cut(s) 99, 174, 196
TauI GCSGC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 29, 32
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 193, 220
TspRI CASTG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.