Rorug07G0243000

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000191
Physical Location & Seq
Reverse (-)
22420754 .. 22422800
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0243000.1

Sequence Viewer

Length: 1884 bp
ATGGGAATTCTGCAGCTGCTGCTACCTTTGTTTTTCTGCTCCATTGTTCTTGTACCCAGCAAAGCAGCTGATCATGACTGTCCAGTTTCAAAGTGTAGTCCTGATGGTCCCCTTATCAAGTTTCCGTTCCGTCTAAAGCATCAACCCCTTCACTGTGGCAATCCAGAGTTTGAGGTTTCCTGCAGCAGCTTCAGCAATATGACCATGATTCAGCTCTCCTCATCTTCAGGACTCTTCACCATCCAAACAATTGATTATGAAAACCAATACTTCGACGTCTACAACAGAGATGGCTGCCTTCCTAGACGGCTTGTAAACTTTACCATCTCCAGCAGCTCACTCTTTCAACCAGCACGTTTATTTGGGAATGACTACTGCATCTTTTCTGGGAAATATTCTCCCAACTTAACATTACTGAATTGTTCCACACCAGAAAACTTTAGCACGGGGAATTTCAACAAGAAGTACATTCCCATCACATGTCTTAGTATACCAGGGTATCAGGTTGTGGCTACTCTACCCTCAACTTCTTTCCTTGACTTGCCGGTGCCAACTTGCCGTAGTTTGATTGGACCAATCTATCTTCCACTACGAAGAGTGGATGGTAATCCGGACAACTGTGTACCGGATAGTGTATTAATTCTGAAATGGGACTTGGGGAATTTCACAGGATGTCAAAACTGTAAAGCGGGAAGGTGCCAATTCAATTATAACAGCAATCAACTGGAGTGTCATCCTGAACTCAGCCCTCCACCTCCACCTCCAGCTCCACCTCCACCTGGTGTATCTAACTCAAAAAGGCCCAGGTATATCATAGGAGTGAGCATAGCTTGTTTTGTTCTCATCTCAGTAGCATCGGTAGCAATTTTCTTCCATGTCACACAAACAAAAAGGATAGAGGAAAAGGAGAATCAAATGAAAATTGAAAGGTTCCTAAATGATCACAAGTCTCATGTACCCACTAGATACTCCTGTGCTAGTATAAAGAAGATGACAGATGGCTTTAAGAAAAAGTTAGGTGAAGGAGGTTTTGGAAGTGTTTTCTTGGGAAAGCTACCCAACGGTGTTCAAGTCGCCGTAAAAGTCCTCAATGGTTCTAAAAGAAGTGGAGAAGATTTTATCAATGAAGTGGGAACCATTGGTAGAATTCACCATGTTAATGTGGTTCGCTTACTTGGGTTCTCTGCTGAAGGATGCAAGTGTGCACTCATTTATGAGTTCATGCCAAACAAGTCCTTAGAAAAGTTCATCACATCTAGAGAATCTAATAATAATGACACTACATTTGATTGGAAGAAACTTCAGCACATTATCACGGGTATAGGAAAGGGGATTGAATACCTTCACCAAGGGTGTGATCAGAGGATCCTCCACTTTGATATCAAGCCTCATAATATCTTGTTAGACCATGACTTCAACCCTAAGATCTCTGATTTTGGTCTTGCAAAACTCTGTTCCAAGGAAGAGAGTATTATATCAATGACTGCTGCTAGAGGCACAGTAGGCTACATCGCACCCGAAGTGTTCATTAGGAACTTCGCAAACGTGTCCTACAAATCTGATATATATAGTTTTGGGATGCTAGCGCTTGAAATGATAGGAGCTAGAAGGGAACCTCCTCTTGGAACTATTAACAGTGAGGTGTATTTTCCTGAATGGATTTATAAGCGTCTAATTCAGGGAGGAACATTGGATTTGAAGCTAGATACTGATGAAGATGCTCATGTTGCAAAGAAACTAGTGATTGTTGCACTATGGTGCATCCAGTGGCACCCGGTGAATCGCCCATCCATGAAATCTGTTATTAGAATGCTAGAAGGAGATTCTGAAAGCTTGATCATGCCACCAAATCCATTCACCTTCACAAGTACTCAGACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

627

Amino Acids

70.0

Weight (kDa)

8.51

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 94 1.1e-13 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 335 - 605 3e-41 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 336 - 603 2e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 711, 1665
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 3 cut(s) 547, 696, 1770
AccI GTMKAC 2 cut(s) 279, 490
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 1 cut(s) 689
AclWI GGATC 2 cut(s) 1360, 1373
AcsI RAATTY 4 cut(s) 6, 451, 661, 1146
AcuI CTGAAG 4 cut(s) 175, 210, 1209, 1286
AcyI GRCGYC 1 cut(s) 276
AdeI CACNNNGTG 2 cut(s) 782, 1777
AfaI GTAC 5 cut(s) 54, 467, 624, 957, 1870
AfeI AGCGCT 1 cut(s) 1587
AfiI CCNNNNNNNGG 2 cut(s) 779, 1622
AflIII ACRYGT 2 cut(s) 479, 1545
AhlI ACTAGT 1 cut(s) 1738
AjnI CCWGG 3 cut(s) 493, 778, 803
AjuI GAANNNNNNNTTGG 6 cut(s) 638, 670, 1014, 1046, 1605, 1637
AleI CACNNNNGTG 1 cut(s) 1756
Alw21I GWGCWC 1 cut(s) 1207
Alw26I GTCTC 1 cut(s) 954
Alw44I GTGCAC 1 cut(s) 1203
AlwI GGATC 2 cut(s) 1360, 1373
AlwNI CAGNNNCTG 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 610
Aor51HI AGCGCT 1 cut(s) 1587
AoxI GGCC 1 cut(s) 800
ApaLI GTGCAC 1 cut(s) 1203
ApeKI GCWGC 9 cut(s) 13, 16, 19, 65, 183, 186, 294, 333, 1487
ApoI RAATTY 4 cut(s) 6, 451, 661, 1146
ArsI GACNNNNNNTTYG 2 cut(s) 1268, 1300
AseI ATTAAT 1 cut(s) 638
Asp700I GAANNNNTTC 1 cut(s) 1341
AspLEI GCGC 1 cut(s) 1588
AspS9I GGNCC 3 cut(s) 107, 572, 801
AsuC2I CCSGG 1 cut(s) 1775
AsuHPI GGTGA 6 cut(s) 229, 1031, 1142, 1337, 1789, 1849
AsuNHI GCTAGC 1 cut(s) 1582
AvaII GGWCC 2 cut(s) 107, 572
BaeGI GKGCMC 1 cut(s) 1207
BaeI ACNNNNGTAYC 4 cut(s) 482, 515, 958, 991
BamHI GGATCC 1 cut(s) 1365
BanI GGYRCC 3 cut(s) 547, 696, 1770
Bbv12I GWGCWC 1 cut(s) 1207
BbvI GCAGC 9 cut(s) 3, 6, 25, 77, 195, 198, 281, 345, 1474
BccI CCATC 8 cut(s) 98, 248, 284, 332, 482, 596, 992, 1795
BceAI ACGGC 3 cut(s) 323, 543, 1061
BciT130I CCWGG 3 cut(s) 495, 780, 805
BclI TGATCA 4 cut(s) 70, 940, 1357, 1836
BcnI CCSGG 1 cut(s) 1775
BcoDI GTCTC 1 cut(s) 954
BcuI ACTAGT 1 cut(s) 1738
BfmI CTRYAG 2 cut(s) 11, 181
BfoI RGCGCY 1 cut(s) 1589
BglII AGATCT 1 cut(s) 1425
BisI GCNGC 9 cut(s) 14, 17, 20, 66, 184, 187, 295, 334, 1488
BlsI GCNGC 9 cut(s) 15, 18, 21, 67, 185, 188, 296, 335, 1489
BmcAI AGTACT 1 cut(s) 1870
Bme1390I CCNGG 4 cut(s) 495, 780, 805, 1775
Bme18I GGWCC 2 cut(s) 107, 572
BmgT120I GGNCC 3 cut(s) 107, 572, 801
BmiI GGNNCC 8 cut(s) 109, 549, 698, 932, 1135, 1367, 1614, 1772
BmrFI CCNGG 4 cut(s) 495, 780, 805, 1775
BmsI GCATC 7 cut(s) 148, 387, 863, 1184, 1569, 1708, 1770
BmtI GCTAGC 1 cut(s) 1586
BpmI CTGGAG 3 cut(s) 313, 746, 747
BpuMI CCSGG 1 cut(s) 1775
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 494, 803, 1348, 1458
BsaWI WCCGGW 2 cut(s) 610, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 779, 1622
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 83, 729, 1765
Bse8I GATNNNNATC 1 cut(s) 606
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 3 cut(s) 495, 780, 805
BseDI CCNNGG 4 cut(s) 494, 803, 1348, 1458
BseGI GGATG 8 cut(s) 240, 607, 677, 733, 1199, 1584, 1761, 1787
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 2 cut(s) 779, 1622
BseMII CTCAG 2 cut(s) 757, 861
BseNI ACTGG 3 cut(s) 83, 729, 1765
BseRI GAGGAG 2 cut(s) 208, 1608
BseSI GKGCMC 1 cut(s) 1207
BseXI GCAGC 9 cut(s) 3, 6, 25, 77, 195, 198, 281, 345, 1474
BseYI CCCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 802
BshNI GGYRCC 3 cut(s) 547, 696, 1770
BsiHKAI GWGCWC 1 cut(s) 1207
BsiSI CCGG 4 cut(s) 545, 611, 626, 1775
BslFI GGGAC 2 cut(s) 93, 665
BslI CCNNNNNNNGG 2 cut(s) 779, 1622
BsmAI GTCTC 1 cut(s) 954
BsmFI GGGAC 2 cut(s) 93, 665
BsmI GAATGC 1 cut(s) 1815
BsnI GGCC 1 cut(s) 802
Bsp1286I GDGCHC 1 cut(s) 1207
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
BspACI CCGC 1 cut(s) 689
BspANI GGCC 1 cut(s) 802
BspCNI CTCAG 2 cut(s) 756, 860
BspEI TCCGGA 1 cut(s) 610
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 8 cut(s) 109, 549, 698, 932, 1135, 1367, 1614, 1772
BspMAI CTGCAG 2 cut(s) 15, 185
BspOI GCTAGC 1 cut(s) 1586
BspPI GGATC 2 cut(s) 1360, 1373
BspT107I GGYRCC 3 cut(s) 547, 696, 1770
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 3 cut(s) 83, 729, 1765
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 4 cut(s) 494, 803, 1348, 1458
BssMI GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
BssNAI GTATAC 1 cut(s) 491
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 1348, 1458
Bst1107I GTATAC 1 cut(s) 491
Bst2UI CCWGG 3 cut(s) 495, 780, 805
Bst4CI ACNGT 7 cut(s) 80, 155, 620, 683, 1064, 1501, 1637
Bst6I CTCTTC 3 cut(s) 239, 589, 1458
BstACI GRCGYC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 1584
BstDEI CTNAG 6 cut(s) 485, 743, 847, 1237, 1422, 1872
BstF5I GGATG 8 cut(s) 240, 607, 677, 733, 1199, 1584, 1761, 1787
BstH2I RGCGCY 1 cut(s) 1589
BstHHI GCGC 1 cut(s) 1588
BstKTI GATC 6 cut(s) 73, 943, 1360, 1368, 1428, 1839
BstMAI GTCTC 1 cut(s) 954
BstMBI GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
BstMWI GCNNNNNNNGC 5 cut(s) 19, 192, 860, 1503, 1727
BstNI CCWGG 3 cut(s) 495, 780, 805
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 4 cut(s) 493, 778, 803, 1773
BstSFI CTRYAG 2 cut(s) 11, 181
BstSLI GKGCMC 1 cut(s) 1207
BstV1I GCAGC 9 cut(s) 3, 6, 25, 77, 195, 198, 281, 345, 1474
BstX2I RGATCY 2 cut(s) 1365, 1425
BstYI RGATCY 2 cut(s) 1365, 1425
BstZ17I GTATAC 1 cut(s) 491
BsuRI GGCC 1 cut(s) 802
BtgZI GCGATG 1 cut(s) 1495
BtsCI GGATG 8 cut(s) 240, 607, 677, 733, 1199, 1584, 1761, 1787
BtsIMutI CAGTG 3 cut(s) 151, 1642, 1772
Cac8I GCNNGC 1 cut(s) 1584
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 1588
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 3 cut(s) 107, 572, 801
CseI GACGC 1 cut(s) 1658
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 5 cut(s) 53, 466, 623, 956, 1869
CviQI GTAC 5 cut(s) 53, 466, 623, 956, 1869
DdeI CTNAG 6 cut(s) 485, 743, 847, 1237, 1422, 1872
DpnI GATC 6 cut(s) 72, 942, 1359, 1367, 1427, 1838
DpnII GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
DraIII CACNNNGTG 2 cut(s) 782, 1777
Eam1104I CTCTTC 3 cut(s) 239, 589, 1458
EarI CTCTTC 3 cut(s) 239, 589, 1458
Eco130I CCWWGG 2 cut(s) 1348, 1458
Eco32I GATATC 1 cut(s) 1381
Eco47I GGWCC 2 cut(s) 107, 572
Eco47III AGCGCT 1 cut(s) 1587
Eco57I CTGAAG 4 cut(s) 175, 210, 1209, 1286
EcoRI GAATTC 2 cut(s) 6, 1146
EcoRII CCWGG 3 cut(s) 493, 778, 803
EcoRV GATATC 1 cut(s) 1381
EcoT14I CCWWGG 2 cut(s) 1348, 1458
ErhI CCWWGG 2 cut(s) 1348, 1458
FaqI GGGAC 2 cut(s) 93, 665
FauI CCCGC 1 cut(s) 682
FbaI TGATCA 4 cut(s) 70, 940, 1357, 1836
FblI GTMKAC 2 cut(s) 279, 490
Fnu4HI GCNGC 9 cut(s) 14, 17, 20, 66, 184, 187, 295, 334, 1488
FokI GGATG 8 cut(s) 227, 614, 684, 720, 1206, 1591, 1748, 1774
Fsp4HI GCNGC 9 cut(s) 14, 17, 20, 66, 184, 187, 295, 334, 1488
GlaI GCGC 1 cut(s) 1587
GluI GCNGC 9 cut(s) 14, 17, 20, 66, 184, 187, 295, 334, 1488
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 3 cut(s) 313, 746, 747
HaeII RGCGCY 1 cut(s) 1589
HaeIII GGCC 1 cut(s) 802
HapII CCGG 4 cut(s) 545, 611, 626, 1775
HgaI GACGC 1 cut(s) 1658
HhaI GCGC 1 cut(s) 1588
Hin1I GRCGYC 1 cut(s) 276
Hin6I GCGC 1 cut(s) 1586
HinP1I GCGC 1 cut(s) 1586
HindIII AAGCTT 1 cut(s) 1831
HinfI GANTC 6 cut(s) 208, 231, 910, 1262, 1780, 1823
HpaII CCGG 4 cut(s) 545, 611, 626, 1775
HphI GGTGA 6 cut(s) 229, 1031, 1142, 1337, 1789, 1849
Hpy166II GTNNAC 5 cut(s) 280, 316, 491, 623, 1205
Hpy188I TCNGA 6 cut(s) 645, 1362, 1432, 1561, 1828, 1875
Hpy188III TCNNGA 8 cut(s) 74, 101, 164, 228, 611, 737, 1257, 1652
Hpy8I GTNNAC 5 cut(s) 280, 316, 491, 623, 1205
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 9 cut(s) 158, 308, 687, 1016, 1184, 1352, 1602, 1811, 1870
HpyCH4III ACNGT 7 cut(s) 80, 155, 620, 683, 1064, 1501, 1637
HpyCH4IV ACGT 3 cut(s) 276, 355, 1545
HpyCH4V TGCA 9 cut(s) 13, 183, 378, 1197, 1205, 1445, 1730, 1751, 1761
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 192, 860, 1503, 1727
HpyF3I CTNAG 6 cut(s) 485, 743, 847, 1237, 1422, 1872
HpySE526I ACGT 3 cut(s) 276, 355, 1545
Hsp92I GRCGYC 1 cut(s) 276
HspAI GCGC 1 cut(s) 1586
Kpn2I TCCGGA 1 cut(s) 610
Ksp22I TGATCA 4 cut(s) 70, 940, 1357, 1836
Kzo9I GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
LmnI GCTCC 3 cut(s) 44, 772, 1601
Lsp1109I GCAGC 9 cut(s) 3, 6, 25, 77, 195, 198, 281, 345, 1474
LweI GCATC 7 cut(s) 148, 387, 863, 1184, 1569, 1708, 1770
MabI ACCWGGT 1 cut(s) 778
MaeII ACGT 3 cut(s) 276, 355, 1545
MaeIII GTNAC 1 cut(s) 877
MalI GATC 6 cut(s) 72, 942, 1359, 1367, 1427, 1838
MboI GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 2 cut(s) 1365, 1425
MhlI GDGCHC 1 cut(s) 1207
MlyI GAGTC 1 cut(s) 225
MroI TCCGGA 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 1341
MseI TTAA 5 cut(s) 407, 638, 1005, 1158, 1632
MslI CAYNNNNRTG 3 cut(s) 818, 1158, 1756
MspA1I CMGCKG 2 cut(s) 16, 68
MspI CCGG 4 cut(s) 545, 611, 626, 1775
MspR9I CCNGG 4 cut(s) 495, 780, 805, 1775
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 1815
MvaI CCWGG 3 cut(s) 495, 780, 805
MwoI GCNNNNNNNGC 5 cut(s) 19, 192, 860, 1503, 1727
NciI CCSGG 1 cut(s) 1775
NdeII GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
NheI GCTAGC 1 cut(s) 1582
NlaIV GGNNCC 8 cut(s) 109, 549, 698, 932, 1135, 1367, 1614, 1772
NmuCI GTSAC 1 cut(s) 877
NspI RCATGY 1 cut(s) 483
OliI CACNNNNGTG 1 cut(s) 1756
PagI TCATGA 1 cut(s) 73
PciI ACATGT 1 cut(s) 479
PctI GAATGC 1 cut(s) 1815
PdmI GAANNNNTTC 1 cut(s) 1341
PfeI GAWTC 5 cut(s) 208, 910, 1262, 1780, 1823
PkrI GCNGC 9 cut(s) 15, 18, 21, 67, 185, 188, 296, 335, 1489
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PscI ACATGT 1 cut(s) 479
PshBI ATTAAT 1 cut(s) 638
PsiI TTATAA 2 cut(s) 711, 1665
Psp6I CCWGG 3 cut(s) 493, 778, 803
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 3 cut(s) 493, 778, 803
PspN4I GGNNCC 8 cut(s) 109, 549, 698, 932, 1135, 1367, 1614, 1772
PspPI GGNCC 3 cut(s) 107, 572, 801
PstI CTGCAG 2 cut(s) 15, 185
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 1365, 1425
PvuII CAGCTG 2 cut(s) 16, 68
RsaI GTAC 5 cut(s) 54, 467, 624, 957, 1870
RsaNI GTAC 5 cut(s) 53, 466, 623, 956, 1869
RseI CAYNNNNRTG 3 cut(s) 818, 1158, 1756
SaqAI TTAA 5 cut(s) 407, 638, 1005, 1158, 1632
SatI GCNGC 9 cut(s) 14, 17, 20, 66, 184, 187, 295, 334, 1488
Sau3AI GATC 6 cut(s) 70, 940, 1357, 1365, 1425, 1836
Sau96I GGNCC 3 cut(s) 107, 572, 801
ScaI AGTACT 1 cut(s) 1870
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 4 cut(s) 495, 780, 805, 1775
SduI GDGCHC 1 cut(s) 1207
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 7 cut(s) 148, 387, 863, 1184, 1569, 1708, 1770
SfcI CTRYAG 2 cut(s) 11, 181
SinI GGWCC 2 cut(s) 107, 572
SmiMI CAYNNNNRTG 3 cut(s) 818, 1158, 1756
SpeI ACTAGT 1 cut(s) 1738
SsiI CCGC 1 cut(s) 689
SspI AATATT 1 cut(s) 395
StyD4I CCNGG 4 cut(s) 493, 778, 803, 1773
StyI CCWWGG 2 cut(s) 1348, 1458
TaaI ACNGT 7 cut(s) 80, 155, 620, 683, 1064, 1501, 1637
TaiI ACGT 3 cut(s) 279, 358, 1548
TaqI TCGA 1 cut(s) 273
TatI WGTACW 2 cut(s) 465, 1868
TfiI GAWTC 5 cut(s) 208, 910, 1262, 1780, 1823
Tru1I TTAA 5 cut(s) 407, 638, 1005, 1158, 1632
Tru9I TTAA 5 cut(s) 407, 638, 1005, 1158, 1632
TscAI CASTG 3 cut(s) 158, 1642, 1772
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 9 cut(s) 13, 16, 19, 65, 183, 186, 294, 333, 1487
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 8 cut(s) 273, 932, 1140, 1210, 1237, 1516, 1728, 1808
TspGWI ACGGA 2 cut(s) 114, 119
TspRI CASTG 3 cut(s) 158, 1642, 1772
VneI GTGCAC 1 cut(s) 1203
VpaK11BI GGWCC 2 cut(s) 107, 572
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 4 cut(s) 6, 451, 661, 1146
XbaI TCTAGA 1 cut(s) 1256
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 279, 490
XmnI GAANNNNTTC 1 cut(s) 1341
ZraI GACGTC 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 1870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.