Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013521.1

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Reverse (-)

686 .. 2872

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgtacaattctctcataaggggttactctagtgctgggctttgtgacgaggctattgggctctatgttcagatggtgcttccgggtgttttgccggataagtttacattcccgtttgcattgagcgcgtgctcaaagattgtagctttctgtgaagggaatgtggggacttggattatgcccacaaaggtgtttgatgaaatgcttgagagaaacatcgtgtcgtggactagtttgatttgtggttatggtagaaggaatatgcccaaggaggctgtttctttgtttttggagatggtggctgccggtgttaagcccaattcggtgactatggtgtgtgtcatttctgcttgtgcaaagttgaaagatgttgcgttgagtgagacagtgtgtgcttacattggggagtctggactcaagactaatatgcttatggtgaattcacttgttgatataagggtaagcatttgggaagaagatttgaataaggggatgaagaactcgatgtcggatcgcagtttttacattgacagtgaagaagaaggtgatgaggagaagggaaacaaaagcatagaaattgggaaggattctgaattttcgggctcagaagccaagcaccgctggcagcagcagattagcccagttcttacaacacccaatggcctcgaagttacagggaatgaatgctgtgaaagattggcatactatgggatgagctcaaatctggtcatttatttcaagcaacatctgcaccaaaccagtgctaaagcagctgaaagctactcaaattggagtggaacatgttatttcactcccttgctcagagcatttttggctgatgcctatttgggaagacatatgactattgcctctttctcaatcatctctgtcattgggctattgatcaaacaagagactcctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

308

Amino Acids

34.02

Weight (kDa)

5.27

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	619
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	439, 593
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	800
AgsI	TTSAA	3 cut(s)	364, 484, 739
AhlI	ACTAGT	1 cut(s)	230
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	4 cut(s)	146, 717, 773, 780
AluI	AGCT	4 cut(s)	146, 717, 773, 780
Alw21I	GWGCWC	2 cut(s)	134, 719
Alw26I	GTCTC	2 cut(s)	377, 908
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	1 cut(s)	661
ApeKI	GCWGC	4 cut(s)	302, 625, 628, 770
ApoI	RAATTY	2 cut(s)	439, 593
AspLEI	GCGC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	337, 448, 557
BanII	GRGCYC	3 cut(s)	63, 605, 719
BbsI	GAAGAC	1 cut(s)	859
Bbv12I	GWGCWC	2 cut(s)	134, 719
BbvI	GCAGC	4 cut(s)	289, 637, 640, 782
BccI	CCATC	2 cut(s)	67, 289
BclI	TGATCA	1 cut(s)	903
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	377, 908
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	2 cut(s)	30, 231
BisI	GCNGC	4 cut(s)	303, 626, 629, 771
BlsI	GCNGC	4 cut(s)	304, 627, 630, 772
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	829
BmuI	ACTGGG	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	859
BpuEI	CTTGAG	2 cut(s)	227, 401
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	641, 759
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	498, 717
BseMII	CTCAG	2 cut(s)	618, 835
BseNI	ACTGG	2 cut(s)	641, 759
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	4 cut(s)	289, 637, 640, 782
BseYI	CCCAGC	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	134, 719
BsiSI	CCGG	3 cut(s)	83, 95, 306
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	377, 908
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	1 cut(s)	663
Bsp1286I	GDGCHC	4 cut(s)	63, 134, 605, 719
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	511, 903
BspACI	CCGC	1 cut(s)	619
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	2 cut(s)	617, 834
BspFNI	CGCG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	641, 759
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	511, 903
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	388, 533
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	130, 623
BstDEI	CTNAG	2 cut(s)	604, 821
BstF5I	GGATG	2 cut(s)	498, 717
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	514, 906
BstMAI	GTCTC	2 cut(s)	377, 908
BstMBI	GATC	2 cut(s)	511, 903
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 622, 748, 770, 833
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	289, 637, 640, 782
BstV2I	GAAGAC	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	498, 717
BtsIMutI	CAGTG	3 cut(s)	393, 538, 766
Cac8I	GCNNGC	2 cut(s)	130, 623
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	801, 924
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	604, 821
DpnI	GATC	2 cut(s)	513, 905
DpnII	GATC	2 cut(s)	511, 903
Ecl136II	GAGCTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	3 cut(s)	63, 605, 719
Eco53kI	GAGCTC	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	3 cut(s)	63, 605, 719
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	804, 927
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	800, 923
FauNDI	CATATG	1 cut(s)	858
FbaI	TGATCA	1 cut(s)	903
Fnu4HI	GCNGC	4 cut(s)	303, 626, 629, 771
FokI	GGATG	2 cut(s)	505, 724
FriOI	GRGCYC	3 cut(s)	63, 605, 719
Fsp4HI	GCNGC	4 cut(s)	303, 626, 629, 771
FspBI	CTAG	2 cut(s)	30, 231
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	303, 626, 629, 771
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	663
HapII	CCGG	3 cut(s)	83, 95, 306
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	804, 927
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	4 cut(s)	407, 414, 587, 916
HpaII	CCGG	3 cut(s)	83, 95, 306
HphI	GGTGA	3 cut(s)	337, 448, 557
Hpy166II	GTNNAC	2 cut(s)	105, 228
Hpy188I	TCNGA	5 cut(s)	72, 511, 592, 607, 824
Hpy188III	TCNNGA	2 cut(s)	411, 418
Hpy8I	GTNNAC	2 cut(s)	105, 228
HpyAV	CCTTC	5 cut(s)	149, 249, 536, 550, 577
HpyCH4III	ACNGT	2 cut(s)	388, 533
HpyCH4V	TGCA	4 cut(s)	119, 356, 751, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 622, 748, 770, 833
HpyF3I	CTNAG	2 cut(s)	604, 821
Hsp92II	CATG	2 cut(s)	804, 927
HspAI	GCGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	903
Kzo9I	GATC	2 cut(s)	511, 903
Lsp1109I	GCAGC	4 cut(s)	289, 637, 640, 782
LweI	GCATC	1 cut(s)	829
MaeI	CTAG	2 cut(s)	30, 231
MaeIII	GTNAC	4 cut(s)	23, 44, 325, 670
MalI	GATC	2 cut(s)	513, 905
MboI	GATC	2 cut(s)	511, 903
MboII	GAAGA	6 cut(s)	485, 488, 508, 548, 551, 864
MhlI	GDGCHC	4 cut(s)	63, 134, 605, 719
MluCI	AATT	6 cut(s)	7, 319, 439, 576, 593, 787
MlyI	GAGTC	3 cut(s)	408, 416, 910
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	5 cut(s)	43, 265, 544, 674, 880
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	2 cut(s)	621, 773
MspI	CCGG	3 cut(s)	83, 95, 306
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	689
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	125, 622, 748, 770, 833
NciI	CCSGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	858
NdeII	GATC	2 cut(s)	511, 903
NlaIII	CATG	2 cut(s)	804, 927
NmuCI	GTSAC	2 cut(s)	44, 325
NspI	RCATGY	1 cut(s)	804
OliI	CACNNNNGTG	1 cut(s)	188
PciI	ACATGT	1 cut(s)	800
PctI	GAATGC	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	304, 627, 630, 772
PleI	GAGTC	3 cut(s)	408, 415, 910
PpsI	GAGTC	3 cut(s)	408, 415, 910
PscI	ACATGT	1 cut(s)	800
Psp124BI	GAGCTC	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	4 cut(s)	303, 626, 629, 771
Sau3AI	GATC	2 cut(s)	511, 903
SchI	GAGTC	3 cut(s)	408, 416, 910
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	4 cut(s)	63, 134, 605, 719
SetI	ASST	6 cut(s)	148, 192, 547, 719, 775, 782
SfaNI	GCATC	1 cut(s)	829
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	206, 416
SmoI	CTYRAG	2 cut(s)	206, 416
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	6 cut(s)	7, 319, 439, 576, 593, 787
SsiI	CCGC	1 cut(s)	619
SspMI	CTAG	2 cut(s)	30, 231
SstI	GAGCTC	1 cut(s)	719
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	388, 533
TaqI	TCGA	2 cut(s)	503, 666
TasI	AATT	6 cut(s)	7, 319, 439, 576, 593, 787
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	3 cut(s)	393, 538, 766
TseFI	GTSAC	2 cut(s)	44, 325
TseI	GCWGC	4 cut(s)	302, 625, 628, 770
Tsp45I	GTSAC	2 cut(s)	44, 325
TspDTI	ATGAA	3 cut(s)	213, 509, 696
TspRI	CASTG	3 cut(s)	393, 538, 766
XapI	RAATTY	2 cut(s)	439, 593
XceI	RCATGY	1 cut(s)	804
XspI	CTAG	2 cut(s)	30, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.