Rh7AG396200

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000191
Physical Location & Seq
Reverse (-)
51857930 .. 51882183
24254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG396200.1

Sequence Viewer

Length: 453 bp
ATGGCCACTTTTCTGGAGAGCCAAACTCCACTGCTCGACGACGTTGTGGAGGGCGCCGTTGACTGCAACGGCCATCCGGTCCGCAGATCAAGTTCAGGCGGTTGGCCTTCCGCATCGTTCATAATATGGGTGGAGGTTGCGGAGAGGCTTGCGTACTATGGAATCAGCTCCAACCTTATTTCGTTTCTGACCGGGCCTCTCGGACAGTCGACGGCCACGGCGGCTGAGAACGTCAACATATGGTCCGGAACAGCGTTCTTGTTTCCTCTATTGGGAGCGTTCGTGGCAGATTCTTTTCTCGGTCGTTACCGCACCATCATTGCCGCTTCTGTCCTCTACGTCATGCAACAATGTTCACAGTTCACACATGTTATTCACCAATTTTGCAATCTGATCTACATATGTCTAAAAAAACGTCTCCTGCATGAGAAATGTGCGGATATAAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

150

Amino Acids

16.48

Weight (kDa)

6.39

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 245
AciI CCGC 8 cut(s) 82, 99, 111, 140, 221, 310, 324, 437
AcoI YGGCCR 3 cut(s) 3, 70, 213
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 367
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 245
AoxI GGCC 6 cut(s) 3, 70, 104, 194, 213, 447
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 79, 194, 243
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 2 cut(s) 79, 243
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 53
BccI CCATC 2 cut(s) 81, 323
BceAI ACGGC 4 cut(s) 41, 85, 228, 234
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 451
BfoI RGCGCY 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 2 cut(s) 222, 324
BlsI GCNGC 2 cut(s) 223, 325
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 2 cut(s) 79, 243
BmgT120I GGNCC 3 cut(s) 79, 194, 243
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 2 cut(s) 76, 245
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 318
BseAI TCCGGA 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 6 cut(s) 5, 72, 106, 196, 215, 449
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 304
BsiSI CCGG 3 cut(s) 77, 192, 246
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsnI GGCC 6 cut(s) 5, 72, 106, 196, 215, 449
Bsp13I TCCGGA 1 cut(s) 245
Bsp143I GATC 2 cut(s) 86, 393
BspACI CCGC 8 cut(s) 82, 99, 111, 140, 221, 310, 324, 437
BspANI GGCC 6 cut(s) 5, 72, 106, 196, 215, 449
BspCNI CTCAG 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 86, 393
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 207, 360
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 89, 396
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 86, 393
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 221, 284
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 6 cut(s) 5, 72, 106, 196, 215, 449
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 79, 194, 243
CpoI CGGWCCG 1 cut(s) 79
Csp6I GTAC 1 cut(s) 154
CspI CGGWCCG 1 cut(s) 79
CviAII CATG 3 cut(s) 343, 368, 425
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 225
DinI GGCGCC 1 cut(s) 55
DpnI GATC 2 cut(s) 88, 395
DpnII GATC 2 cut(s) 86, 393
EaeI YGGCCR 3 cut(s) 3, 70, 213
Eco147I AGGCCT 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 79, 243
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 3 cut(s) 346, 371, 428
FatI CATG 3 cut(s) 342, 367, 424
FauNDI CATATG 2 cut(s) 239, 401
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 222, 324
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 222, 324
FspBI CTAG 1 cut(s) 451
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 222, 324
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 6 cut(s) 5, 72, 106, 196, 215, 449
HapII CCGG 3 cut(s) 77, 192, 246
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 3 cut(s) 346, 371, 428
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 3 cut(s) 61, 210, 235
HindII GTYRAC 3 cut(s) 61, 210, 235
HinfI GANTC 2 cut(s) 162, 290
HpaII CCGG 3 cut(s) 77, 192, 246
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 5 cut(s) 61, 210, 235, 356, 363
Hpy188I TCNGA 3 cut(s) 189, 203, 393
Hpy188III TCNNGA 2 cut(s) 14, 246
Hpy8I GTNNAC 5 cut(s) 61, 210, 235, 356, 363
Hpy99I CGWCG 3 cut(s) 41, 44, 214
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 2 cut(s) 207, 360
HpyCH4IV ACGT 4 cut(s) 42, 231, 339, 415
HpyCH4V TGCA 4 cut(s) 66, 346, 387, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 284
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 4 cut(s) 42, 231, 339, 415
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 3 cut(s) 346, 371, 428
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 245
Kzo9I GATC 2 cut(s) 86, 393
LmnI GCTCC 2 cut(s) 173, 275
LpnPI CCDG 5 cut(s) 81, 90, 205, 259, 434
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 451
MaeII ACGT 4 cut(s) 42, 231, 339, 415
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 88, 395
MboI GATC 2 cut(s) 86, 393
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 380
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 43, 127, 138, 207, 276, 344
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 77, 192, 246
MspR9I CCNGG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 221, 284
NarI GGCGCC 1 cut(s) 54
NciI CCSGG 1 cut(s) 193
NdeI CATATG 2 cut(s) 239, 401
NdeII GATC 2 cut(s) 86, 393
NlaIII CATG 3 cut(s) 346, 371, 428
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 1 cut(s) 371
PceI AGGCCT 1 cut(s) 449
PciI ACATGT 1 cut(s) 367
PfeI GAWTC 2 cut(s) 162, 290
PkrI GCNGC 2 cut(s) 223, 325
PluTI GGCGCC 1 cut(s) 57
PscI ACATGT 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 79, 194, 243
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
Rsr2I CGGWCCG 1 cut(s) 79
RsrII CGGWCCG 1 cut(s) 79
SalI GTCGAC 1 cut(s) 208
SatI GCNGC 2 cut(s) 222, 324
Sau3AI GATC 2 cut(s) 86, 393
Sau96I GGNCC 3 cut(s) 79, 194, 243
ScrFI CCNGG 1 cut(s) 193
SetI ASST 7 cut(s) 45, 138, 170, 177, 234, 342, 418
SfaNI GCATC 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 2 cut(s) 79, 243
Sse9I AATT 1 cut(s) 380
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 8 cut(s) 82, 99, 111, 140, 221, 310, 324, 437
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 1 cut(s) 451
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 207, 360
TaiI ACGT 4 cut(s) 45, 234, 342, 418
TaqI TCGA 2 cut(s) 36, 209
TaqII GACCGA 1 cut(s) 290
TasI AATT 1 cut(s) 380
TauI GCSGC 2 cut(s) 224, 326
TfiI GAWTC 2 cut(s) 162, 290
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 79, 243
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.