Rorug07G0242800

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000191
Physical Location & Seq
Forward (+)
22375758 .. 22378964
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0242800.1

Sequence Viewer

Length: 651 bp
ATGGGTGCTGGAGGTCCTGATGAGGAAGACAACAGGTGGCCGCCATGGCTGAAGCCTCTGCTCAAAGAGAGCTTCTTTGTTCATTGCAAGTTACATGCCGATTCTCACAAGAGTGAATGCAATATGTACTGCTTGGATTGTATGAATGGCCCTCTCTGCTCTCTCTGCCTTGCCTACCACAAGGACCATCGTGCTATTCAGATAAGGAGGTCTTCATACCATGATGTGATTAGAGTGAATGAGATTCAGAAGCATCTCGACATCGCCGGAGTCCAGACCTACATTATCAACAGTGCTCGAGTCGTTTTCCTGAATGAGAGGCCTCAGCCTAGGCCTGGGAAAGGAGTCACCAATACCTGTGAAGTCTGTGAGCGAAGCCTTCTTGATTCGTTCAGATTCTGTTCTCTTGGTTGCAAGATTGTGGGTACTTCCCAGAATCCACTAAAGAAAATGAGAGCCAGGCTAATGGGTTCCGACTCCGAGGACTCATACAGCAGCAGCAGCAGCAGCCATGGAAGGTTCTCCAACAACAAAGTTCAGAGCTTCTCGCCATCAACACCACCCCCAACTTCCAACAACTACCGGACGGCCAAGAGGAGGAAGGGAATTCCCCACAGGGCACCAATGGGAGGACTAATCATAGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

216

Amino Acids

24.34

Weight (kDa)

9.21

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 69 - 140 1.8e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 619
AciI CCGC 1 cut(s) 41
AcoI YGGCCR 2 cut(s) 38, 588
AcsI RAATTY 1 cut(s) 606
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 128, 427
AfiI CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
AjnI CCWGG 2 cut(s) 334, 458
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 2 cut(s) 72, 543
AluI AGCT 2 cut(s) 72, 543
Alw21I GWGCWC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 399
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 5 cut(s) 38, 148, 320, 332, 588
ApeKI GCWGC 5 cut(s) 495, 498, 501, 504, 507
ApoI RAATTY 1 cut(s) 606
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 3 cut(s) 14, 149, 184
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 2 cut(s) 14, 184
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 619
BbsI GAAGAC 2 cut(s) 33, 204
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 507, 510, 513, 516, 519
BccI CCATC 2 cut(s) 195, 559
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 2 cut(s) 336, 460
BfaI CTAG 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 6 cut(s) 41, 496, 499, 502, 505, 508
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 6 cut(s) 42, 497, 500, 503, 506, 509
Bme1390I CCNGG 2 cut(s) 336, 460
Bme18I GGWCC 2 cut(s) 14, 184
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 14, 149, 184
BmiI GGNNCC 2 cut(s) 472, 621
BmrFI CCNGG 2 cut(s) 336, 460
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 33, 204
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 324
BsaJI CCNNGG 5 cut(s) 44, 329, 335, 480, 511
BsaWI WCCGGW 1 cut(s) 582
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 336, 460
BseDI CCNNGG 5 cut(s) 44, 329, 335, 480, 511
BseLI CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 610
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 5 cut(s) 507, 510, 513, 516, 519
BshFI GGCC 5 cut(s) 40, 150, 322, 334, 590
BshNI GGYRCC 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 2 cut(s) 267, 583
BslI CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 5 cut(s) 40, 150, 322, 334, 590
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 298, 622
Bsp19I CCATGG 2 cut(s) 44, 511
BspACI CCGC 1 cut(s) 41
BspANI GGCC 5 cut(s) 40, 150, 322, 334, 590
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 472, 621
BspT107I GGYRCC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 82
BssECI CCNNGG 5 cut(s) 44, 329, 335, 480, 511
BssT1I CCWWGG 3 cut(s) 44, 329, 511
Bst2UI CCWGG 2 cut(s) 336, 460
Bst4CI ACNGT 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 44, 511
BstENI CCTNNNNNAGG 1 cut(s) 339
BstMWI GCNNNNNNNGC 6 cut(s) 46, 156, 165, 501, 504, 507
BstNI CCWGG 2 cut(s) 336, 460
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 334, 458
BstSLI GKGCMC 1 cut(s) 622
BstV1I GCAGC 5 cut(s) 507, 510, 513, 516, 519
BstV2I GAAGAC 2 cut(s) 33, 204
BstXI CCANNNNNNTGG 1 cut(s) 466
BsuRI GGCC 5 cut(s) 40, 150, 322, 334, 590
BtgI CCRYGG 2 cut(s) 44, 511
BtgZI GCGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 298
CaiI CAGNNNCTG 1 cut(s) 399
Cfr13I GGNCC 3 cut(s) 14, 149, 184
Csp6I GTAC 2 cut(s) 127, 426
CviAII CATG 4 cut(s) 45, 95, 221, 512
CviQI GTAC 2 cut(s) 127, 426
DdeI CTNAG 1 cut(s) 324
EaeI YGGCCR 2 cut(s) 38, 588
Eco130I CCWWGG 3 cut(s) 44, 329, 511
Eco147I AGGCCT 2 cut(s) 322, 334
Eco47I GGWCC 2 cut(s) 14, 184
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 334, 458
EcoT14I CCWWGG 3 cut(s) 44, 329, 511
ErhI CCWWGG 3 cut(s) 44, 329, 511
FaeI CATG 4 cut(s) 48, 98, 224, 515
FaiI YATR 9 cut(s) 46, 96, 125, 143, 217, 222, 490, 513, 641
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FatI CATG 4 cut(s) 44, 94, 220, 511
Fnu4HI GCNGC 6 cut(s) 41, 496, 499, 502, 505, 508
Fsp4HI GCNGC 6 cut(s) 41, 496, 499, 502, 505, 508
FspBI CTAG 1 cut(s) 330
GluI GCNGC 6 cut(s) 41, 496, 499, 502, 505, 508
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 5 cut(s) 40, 150, 322, 334, 590
HapII CCGG 2 cut(s) 267, 583
Hin1II CATG 4 cut(s) 48, 98, 224, 515
HpaII CCGG 2 cut(s) 267, 583
HphI GGTGA 1 cut(s) 340
Hpy188I TCNGA 6 cut(s) 201, 249, 395, 475, 481, 540
Hpy188III TCNNGA 5 cut(s) 17, 257, 274, 310, 383
HpyAV CCTTC 3 cut(s) 389, 510, 595
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 87, 120, 414
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 156, 165, 501, 504, 507
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 4 cut(s) 48, 98, 224, 515
Lsp1109I GCAGC 5 cut(s) 507, 510, 513, 516, 519
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 90, 346
MboII GAAGA 2 cut(s) 38, 204
MhlI GDGCHC 2 cut(s) 298, 622
MluCI AATT 1 cut(s) 606
MlyI GAGTC 5 cut(s) 279, 309, 354, 470, 479
MmeI TCCRAC 3 cut(s) 498, 549, 597
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 2 cut(s) 267, 583
MspR9I CCNGG 2 cut(s) 336, 460
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 2 cut(s) 336, 460
MwoI GCNNNNNNNGC 6 cut(s) 46, 156, 165, 501, 504, 507
NcoI CCATGG 2 cut(s) 44, 511
NlaIII CATG 4 cut(s) 48, 98, 224, 515
NlaIV GGNNCC 2 cut(s) 472, 621
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 297
PceI AGGCCT 2 cut(s) 322, 334
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 5 cut(s) 101, 244, 386, 396, 436
PkrI GCNGC 6 cut(s) 42, 497, 500, 503, 506, 509
PleI GAGTC 5 cut(s) 278, 308, 353, 470, 479
PpsI GAGTC 5 cut(s) 278, 308, 353, 470, 479
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 334, 458
PspGI CCWGG 2 cut(s) 334, 458
PspN4I GGNNCC 2 cut(s) 472, 621
PspPI GGNCC 3 cut(s) 14, 149, 184
PspPPI RGGWCCY 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 399
RsaI GTAC 2 cut(s) 128, 427
RsaNI GTAC 2 cut(s) 127, 426
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 6 cut(s) 41, 496, 499, 502, 505, 508
Sau96I GGNCC 3 cut(s) 14, 149, 184
SchI GAGTC 5 cut(s) 279, 309, 354, 470, 479
ScrFI CCNGG 2 cut(s) 336, 460
SduI GDGCHC 2 cut(s) 298, 622
SetI ASST 8 cut(s) 16, 38, 74, 212, 281, 359, 521, 545
SfaNI GCATC 1 cut(s) 262
Sfr274I CTCGAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 14, 184
SlaI CTCGAG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 606
SseBI AGGCCT 2 cut(s) 322, 334
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 2 cut(s) 322, 334
StyD4I CCNGG 2 cut(s) 334, 458
StyI CCWWGG 3 cut(s) 44, 329, 511
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 258, 298
TasI AATT 1 cut(s) 606
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 5 cut(s) 101, 244, 386, 396, 436
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 5 cut(s) 495, 498, 501, 504, 507
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 71, 158, 204
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 14, 184
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 606
XceI RCATGY 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 297
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.