Rh3CG114700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000191
Physical Location & Seq
Forward (+)
9241675 .. 9242034
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG114700.1

Sequence Viewer

Length: 273 bp
ATGGAACTGGAAGCTGCCAAAGCTGGGTACACCGGAGATGGCACTGTCGATCTCCGAGGACGCCCTGTGCTTGCCTCTAAGACTGGCAAATGGAAAGCCTGCGCTTTCCTTGTTGGGTACGAAGCTTTTGAGAGGATGGCCTTCTATGGAATAGCTTCAAATTTGGTGAACTACTTGACCACACAGCTTCATGAAGACACCGTCTCCTCCGTCCGGAATGTCAATAACTGGTCCGGTGCTGTTTGGATCACTCCGATCCTCGGCGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

90

Amino Acids

9.81

Weight (kDa)

6.71

Isoelectric Point (pI)

14.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 213
AclWI GGATC 2 cut(s) 250, 254
AcsI RAATTY 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 61
AfaI GTAC 2 cut(s) 29, 119
AfiI CCNNNNNNNGG 3 cut(s) 24, 213, 260
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 5 cut(s) 14, 23, 125, 155, 187
AluI AGCT 5 cut(s) 14, 23, 125, 155, 187
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 2 cut(s) 250, 254
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 154
AspLEI GCGC 2 cut(s) 104, 266
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 2 cut(s) 32, 130
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 55, 259
BsaWI WCCGGW 3 cut(s) 32, 213, 233
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 213, 260
Bse1I ACTGG 3 cut(s) 12, 88, 233
BseAI TCCGGA 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 55, 259
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 24, 213, 260
BseNI ACTGG 3 cut(s) 12, 88, 233
BseRI GAGGAG 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 140
BsiSI CCGG 3 cut(s) 33, 214, 234
BslI CCNNNNNNNGG 3 cut(s) 24, 213, 260
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsnI GGCC 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 3 cut(s) 49, 246, 255
BspANI GGCC 1 cut(s) 140
BspEI TCCGGA 1 cut(s) 213
BspHI TCATGA 1 cut(s) 190
BspPI GGATC 2 cut(s) 250, 254
BsrI ACTGG 3 cut(s) 12, 88, 233
BssECI CCNNGG 2 cut(s) 55, 259
BssMI GATC 3 cut(s) 49, 246, 255
BssNI GRCGYC 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 46, 202
BstACI GRCGYC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 72, 100
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 104, 266
BstKTI GATC 3 cut(s) 52, 249, 258
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 49, 246, 255
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 42, 268
Cac8I GCNNGC 2 cut(s) 72, 100
CciI TCATGA 1 cut(s) 190
CfoI GCGC 2 cut(s) 104, 266
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 28, 118
CviAII CATG 1 cut(s) 191
CviJI RGCY 7 cut(s) 14, 23, 98, 125, 140, 155, 187
CviKI_1 RGCY 7 cut(s) 14, 23, 98, 125, 140, 155, 187
CviQI GTAC 2 cut(s) 28, 118
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 51, 248, 257
DpnII GATC 3 cut(s) 49, 246, 255
Eco47I GGWCC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 1 cut(s) 194
FaiI YATR 2 cut(s) 147, 192
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 2 cut(s) 103, 265
GluI GCNGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 140
HapII CCGG 3 cut(s) 33, 214, 234
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 104, 266
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 2 cut(s) 102, 264
HinP1I GCGC 2 cut(s) 102, 264
HindIII AAGCTT 1 cut(s) 123
HpaII CCGG 3 cut(s) 33, 214, 234
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 30, 169
Hpy188I TCNGA 2 cut(s) 56, 255
Hpy188III TCNNGA 2 cut(s) 191, 214
Hpy8I GTNNAC 2 cut(s) 30, 169
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 46, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 2 cut(s) 102, 264
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 49, 246, 255
LpnPI CCDG 8 cut(s) 9, 46, 69, 78, 112, 214, 227, 247
MalI GATC 3 cut(s) 51, 248, 257
MboI GATC 3 cut(s) 49, 246, 255
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 160
MnlI CCTC 5 cut(s) 50, 85, 126, 217, 269
MroI TCCGGA 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 154
MspI CCGG 3 cut(s) 33, 214, 234
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 3 cut(s) 49, 246, 255
NlaIII CATG 1 cut(s) 194
NmeAIII GCCGAG 1 cut(s) 240
PagI TCATGA 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 154
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 231
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 2 cut(s) 29, 119
RsaNI GTAC 2 cut(s) 28, 118
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 49, 246, 255
Sau96I GGNCC 1 cut(s) 231
SetI ASST 5 cut(s) 16, 25, 127, 157, 189
SinI GGWCC 1 cut(s) 231
Sse9I AATT 1 cut(s) 160
TaaI ACNGT 2 cut(s) 46, 202
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 160
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 179, 207
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.