Rmu_sc0025092.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025092.1
OG0000191
Physical Location & Seq
Reverse (-)
1 .. 901
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025092.1_g000001.1.cds

Sequence Viewer

Length: 335 bp
atggatgatacctgtgctctgtgcggagacacttcaatgggtcacatatgggccctggccatcgacagttctgctctacctgcatttttcacctccgtttcatctgtggagattcccattgctgcctctgcaagagtgaatctaagatcatcttcgtcaccaaggaacagaatgagaagcttggtaggaagtgtgatctccagcatgaaaaatgaattgaatgtagttctgaataagttaaacaagaagatcaagaagagtcaacagaagtacgtgatctactctgcatttattcgcaaggagaaaaataatcatgatgagttgatcagtgtacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.39

Weight (kDa)

9.8

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 2 cut(s) 272, 333
AgsI TTSAA 2 cut(s) 36, 220
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 21
AoxI GGCC 2 cut(s) 51, 57
ApaI GGGCCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 51, 52
AsuHPI GGTGA 2 cut(s) 82, 150
BaeGI GKGCMC 1 cut(s) 55
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 51, 52
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 54, 161
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 54, 161
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 2 cut(s) 53, 59
BsiHKAI GWGCWC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 2 cut(s) 53, 59
Bsp120I GGGCCC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 19, 55
Bsp143I GATC 5 cut(s) 146, 195, 249, 276, 324
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 53, 59
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 54, 161
BssMI GATC 5 cut(s) 146, 195, 249, 276, 324
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 149, 198, 252, 279, 327
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 5 cut(s) 146, 195, 249, 276, 324
BstMWI GCNNNNNNNGC 2 cut(s) 80, 128
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 53, 59
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 51, 52
Csp6I GTAC 2 cut(s) 271, 332
CviAII CATG 2 cut(s) 205, 314
CviJI RGCY 3 cut(s) 53, 59, 180
CviKI_1 RGCY 3 cut(s) 53, 59, 180
CviQI GTAC 2 cut(s) 271, 332
DdeI CTNAG 1 cut(s) 143
DpnI GATC 5 cut(s) 148, 197, 251, 278, 326
DpnII GATC 5 cut(s) 146, 195, 249, 276, 324
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 208, 317
FaiI YATR 4 cut(s) 47, 49, 206, 315
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 2 cut(s) 204, 313
FauNDI CATATG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 2 cut(s) 53, 59
Hin1II CATG 2 cut(s) 208, 317
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 3 cut(s) 112, 139, 259
HphI GGTGA 2 cut(s) 82, 150
Hpy166II GTNNAC 2 cut(s) 263, 332
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 253, 314
Hpy8I GTNNAC 2 cut(s) 263, 332
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 83, 131, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 128
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 208, 317
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 5 cut(s) 146, 195, 249, 276, 324
LpnPI CCDG 5 cut(s) 25, 41, 68, 93, 214
Lsp1109I GCAGC 1 cut(s) 109
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 41, 156
MalI GATC 5 cut(s) 148, 197, 251, 278, 326
MboI GATC 5 cut(s) 146, 195, 249, 276, 324
MboII GAAGA 3 cut(s) 144, 259, 268
MhlI GDGCHC 2 cut(s) 19, 55
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 2 cut(s) 103, 136
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 80, 128
NdeI CATATG 1 cut(s) 47
NdeII GATC 5 cut(s) 146, 195, 249, 276, 324
NlaIII CATG 2 cut(s) 208, 317
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 41, 156
PagI TCATGA 1 cut(s) 313
PfeI GAWTC 2 cut(s) 112, 139
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 53
PspOMI GGGCCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 51, 52
RsaI GTAC 2 cut(s) 272, 333
RsaNI GTAC 2 cut(s) 271, 332
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 5 cut(s) 146, 195, 249, 276, 324
Sau96I GGNCC 2 cut(s) 51, 52
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 19, 55
SetI ASST 5 cut(s) 14, 82, 95, 182, 276
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 215
TfiI GAWTC 2 cut(s) 112, 139
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 2 cut(s) 41, 156
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 41, 156
TspDTI ATGAA 3 cut(s) 90, 221, 228
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.