Rmu_sc0000883.1_g000014

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000883.1
OG0000191
Physical Location & Seq
Forward (+)
62307 .. 63191
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000883.1_g000014.1.cds

Sequence Viewer

Length: 885 bp
atgcttgaccaaacttcttctgaatttcaagctccttttaaattgtttgaatcctctaaatctggcaggttcctcaacaaagccttgcttgctccagatgattcgaagggaaatgggaaggtgtgtaccgtcctcgaggttgaagaagcaaaaagcattcttcggctatttccaatatgggctacatgcttggcatatgctattgtgtttgcacagttttcaaccttcttcaccaagcaaggtgctaccatgaacagaacaatcgtgccaggttttgacataccaccagcttcccttcagacttttatcggcctagcaactatcatcttcattcccatttatgaccgcatttttgtaccaatgactagagcttatactaggaaaccctctggcatcacaatgctacagagaattggaacagggatgtgtttatgtgctatttccatggttgttgcagctctggttgagatgacaaggctgcaaactgcggaagattatggtctggttgataatccaagtgccacagttccaatgagtatttggtggttggctcctcagtacttgttgatgggattagccgatgttttcacaatggttggtttgcaagagtttttctatgaccaggtgccaactgagttacggagtgtaggacttgccctctacctcagcatatttggtgttggaagctttttcagcagttttcttatctcggccattgagaaagctaccagtgggatgggtcaagatagttggttttctaataatctgaaccgtgcacatcttgattacttctattggctacttgctggactcagtgtggtagaattggctatctttgtgtattttgcaagatcttacatttataataggagaggtacaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

294

Amino Acids

32.81

Weight (kDa)

6.59

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
AbsI CCTCGAGG 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 625
AciI CCGC 2 cut(s) 346, 488
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 4 cut(s) 127, 357, 560, 877
AgsI TTSAA 4 cut(s) 29, 50, 143, 222
AjnI CCWGG 2 cut(s) 268, 621
AluBI AGCT 6 cut(s) 32, 290, 371, 458, 687, 725
AluI AGCT 6 cut(s) 32, 290, 371, 458, 687, 725
Alw21I GWGCWC 1 cut(s) 778
Alw44I GTGCAC 1 cut(s) 774
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 310, 711
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 2 cut(s) 455, 478
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 665
BbvI GCAGC 2 cut(s) 465, 467
BccI CCATC 2 cut(s) 562, 730
BciT130I CCWGG 2 cut(s) 270, 623
BfaI CTAG 3 cut(s) 314, 366, 378
BfmI CTRYAG 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 851
BisI GCNGC 2 cut(s) 456, 479
BlsI GCNGC 2 cut(s) 457, 480
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 2 cut(s) 270, 623
BmeT110I CYCGRG 1 cut(s) 134
BmiI GGNNCC 3 cut(s) 71, 552, 627
BmrFI CCNGG 2 cut(s) 270, 623
BmsI GCATC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 729
BseBI CCWGG 2 cut(s) 270, 623
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 429, 741
BseMII CTCAG 4 cut(s) 569, 624, 679, 826
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 1 cut(s) 543
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 2 cut(s) 465, 467
BshFI GGCC 2 cut(s) 312, 713
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 134
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 312, 713
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 778
Bsp143I GATC 1 cut(s) 851
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 346, 488
BspANI GGCC 2 cut(s) 312, 713
BspCNI CTCAG 4 cut(s) 568, 625, 678, 825
BspLI GGNNCC 3 cut(s) 71, 552, 627
BspMI ACCTGC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 625
BsrI ACTGG 1 cut(s) 729
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 1 cut(s) 851
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 270, 623
Bst4CI ACNGT 4 cut(s) 130, 216, 526, 773
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 555, 633, 665, 812
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 429, 741
BstKTI GATC 1 cut(s) 854
BstMBI GATC 1 cut(s) 851
BstMWI GCNNNNNNNGC 2 cut(s) 89, 693
BstNI CCWGG 2 cut(s) 270, 623
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 268, 621
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 778
BstV1I GCAGC 2 cut(s) 465, 467
BstX2I RGATCY 1 cut(s) 851
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 851
BsuRI GGCC 2 cut(s) 312, 713
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 2 cut(s) 429, 741
BtsIMutI CAGTG 2 cut(s) 736, 820
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 621
Csp6I GTAC 4 cut(s) 126, 356, 559, 876
CviAII CATG 3 cut(s) 186, 250, 445
CviQI GTAC 4 cut(s) 126, 356, 559, 876
DdeI CTNAG 4 cut(s) 555, 633, 665, 812
DpnI GATC 1 cut(s) 853
DpnII GATC 1 cut(s) 851
DraI TTTAAA 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 268, 621
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 189, 253, 448
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FatI CATG 3 cut(s) 185, 249, 444
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 456, 479
FokI GGATG 2 cut(s) 436, 748
Fsp4HI GCNGC 2 cut(s) 456, 479
FspBI CTAG 3 cut(s) 314, 366, 378
GluI GCNGC 2 cut(s) 456, 479
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 312, 713
Hin1II CATG 3 cut(s) 189, 253, 448
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 3 cut(s) 50, 101, 810
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 126, 776
Hpy188I TCNGA 3 cut(s) 22, 300, 768
Hpy188III TCNNGA 3 cut(s) 95, 743, 782
Hpy8I GTNNAC 2 cut(s) 126, 776
HpyAV CCTTC 4 cut(s) 100, 112, 235, 305
HpyCH4III ACNGT 4 cut(s) 130, 216, 526, 773
HpyCH4V TGCA 6 cut(s) 212, 455, 481, 604, 776, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 693
HpyF3I CTNAG 4 cut(s) 555, 633, 665, 812
Hsp92II CATG 3 cut(s) 189, 253, 448
Kzo9I GATC 1 cut(s) 851
LmnI GCTCC 3 cut(s) 37, 97, 556
Lsp1109I GCAGC 2 cut(s) 465, 467
LweI GCATC 1 cut(s) 402
MabI ACCWGGT 1 cut(s) 621
MaeI CTAG 3 cut(s) 314, 366, 378
MaeIII GTNAC 1 cut(s) 636
MalI GATC 1 cut(s) 853
MboI GATC 1 cut(s) 851
MboII GAAGA 6 cut(s) 9, 152, 155, 220, 319, 503
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 4 cut(s) 23, 41, 411, 824
MlyI GAGTC 1 cut(s) 804
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 9 cut(s) 64, 83, 130, 143, 397, 564, 668, 674, 866
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 270, 623
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 2 cut(s) 270, 623
MwoI GCNNNNNNNGC 2 cut(s) 89, 693
NcoI CCATGG 1 cut(s) 444
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 851
NlaIII CATG 3 cut(s) 189, 253, 448
NlaIV GGNNCC 3 cut(s) 71, 552, 627
NmeAIII GCCGAG 1 cut(s) 689
NspI RCATGY 1 cut(s) 189
NspV TTCGAA 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 134
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 50, 101
PkrI GCNGC 2 cut(s) 457, 480
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
PsiI TTATAA 1 cut(s) 864
Psp6I CCWGG 2 cut(s) 268, 621
PspGI CCWGG 2 cut(s) 268, 621
PspN4I GGNNCC 3 cut(s) 71, 552, 627
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 1 cut(s) 851
RsaI GTAC 4 cut(s) 127, 357, 560, 877
RsaNI GTAC 4 cut(s) 126, 356, 559, 876
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 456, 479
Sau3AI GATC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 1 cut(s) 804
ScrFI CCNGG 2 cut(s) 270, 623
SduI GDGCHC 1 cut(s) 778
SexAI ACCWGGT 1 cut(s) 621
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 404
Sfr274I CTCGAG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 4 cut(s) 23, 41, 411, 824
SsiI CCGC 2 cut(s) 346, 488
SspMI CTAG 3 cut(s) 314, 366, 378
StyD4I CCNGG 2 cut(s) 268, 621
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 4 cut(s) 130, 216, 526, 773
TaqI TCGA 2 cut(s) 104, 135
TasI AATT 4 cut(s) 23, 41, 411, 824
TatI WGTACW 1 cut(s) 558
TfiI GAWTC 2 cut(s) 50, 101
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 736, 820
TseI GCWGC 2 cut(s) 455, 478
TspDTI ATGAA 2 cut(s) 266, 319
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 2 cut(s) 736, 820
VneI GTGCAC 1 cut(s) 774
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 3 cut(s) 314, 366, 378
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.