Rmu_sc0001930.1_g000006

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001930.1
OG0000191
Physical Location & Seq
Reverse (-)
39421 .. 41199
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001930.1_g000006.1.cds

Sequence Viewer

Length: 660 bp
atggctacatctctcgaagaatatccggagaaccgaactccactcctagacggcgccgttgattacaaaggccatcaggtccacagatcaacttccggcggttggcgttccgcatccttcataataggcgtggaagttgcggagaggttcgcctacagtggaataagctcgaatctgataacgtttctgacgggaccgttgggagagtcgacggtgacggcggcggagaatgtgaacatatggtccggaacggcgcagttgcttcctctgttgggagcattcgtggcggattcttttctgtccggaacggcgcagttgcttcctctactgggagcattcgtggcggattcttttctgggtcgctatcgcaccattattgttgcttctctcctctacattttgggactcggcttgttgaccatatcggccttgcttacttcttctgagcttcaaatagtgttattcttcttctctctatatctagtagcagttgcgcaaggtggacacaagccctgtgttcaggctttcggggcagatcagtttgatggacaagatccagaggagtgcaaagcgaaaagctcattcttcaattggtggtactttgtggaactaggacataccgatatagcatcaaaggggaggaggaaagcccatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

219

Amino Acids

23.7

Weight (kDa)

5.48

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 209
AccIII TCCGGA 3 cut(s) 25, 245, 302
AciI CCGC 7 cut(s) 99, 111, 140, 221, 224, 287, 344
AclI AACGTT 1 cut(s) 182
AclWI GGATC 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 3 cut(s) 102, 272, 329
AgsI TTSAA 2 cut(s) 452, 589
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 168, 448, 579
AluI AGCT 3 cut(s) 168, 448, 579
AlwI GGATC 1 cut(s) 548
Aor13HI TCCGGA 3 cut(s) 25, 245, 302
AoxI GGCC 2 cut(s) 70, 426
AspLEI GCGC 4 cut(s) 56, 256, 313, 496
AspS9I GGNCC 3 cut(s) 79, 194, 243
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 3 cut(s) 79, 194, 243
BanI GGYRCC 1 cut(s) 53
BccI CCATC 2 cut(s) 81, 539
BceAI ACGGC 5 cut(s) 41, 67, 234, 267, 324
BfaI CTAG 3 cut(s) 47, 482, 611
BfmI CTRYAG 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme18I GGWCC 3 cut(s) 79, 194, 243
BmgT120I GGNCC 3 cut(s) 79, 194, 243
BmiI GGNNCC 2 cut(s) 55, 195
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 122, 638
BmuI ACTGGG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 54
BsaWI WCCGGW 3 cut(s) 25, 245, 302
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 324, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 272, 329
Bse1I ACTGG 1 cut(s) 333
BseAI TCCGGA 3 cut(s) 25, 245, 302
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 3 cut(s) 102, 272, 329
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 3 cut(s) 380, 575, 655
BshFI GGCC 2 cut(s) 72, 428
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 4 cut(s) 26, 96, 246, 303
BslFI GGGAC 2 cut(s) 207, 417
BslI CCNNNNNNNGG 3 cut(s) 102, 272, 329
BsmFI GGGAC 2 cut(s) 207, 417
BsmI GAATGC 2 cut(s) 278, 335
BsnI GGCC 2 cut(s) 72, 428
Bsp13I TCCGGA 3 cut(s) 25, 245, 302
Bsp143I GATC 3 cut(s) 86, 535, 553
BspACI CCGC 7 cut(s) 99, 111, 140, 221, 224, 287, 344
BspANI GGCC 2 cut(s) 72, 428
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 3 cut(s) 25, 245, 302
BspLI GGNNCC 2 cut(s) 55, 195
BspPI GGATC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 333
BssMI GATC 3 cut(s) 86, 535, 553
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 158, 198, 214
BstACI GRCGYC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 4 cut(s) 56, 256, 313, 496
BstKTI GATC 3 cut(s) 89, 538, 556
BstMBI GATC 3 cut(s) 86, 535, 553
BstMWI GCNNNNNNNGC 3 cut(s) 284, 341, 530
BstSFI CTRYAG 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 2 cut(s) 72, 428
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 4 cut(s) 56, 256, 313, 496
Cfr13I GGNCC 3 cut(s) 79, 194, 243
Csp6I GTAC 1 cut(s) 598
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 1 cut(s) 444
DinI GGCGCC 1 cut(s) 55
DpnI GATC 3 cut(s) 88, 537, 555
DpnII GATC 3 cut(s) 86, 535, 553
EciI GGCGGA 3 cut(s) 239, 302, 359
Eco47I GGWCC 3 cut(s) 79, 194, 243
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaiI YATR 7 cut(s) 122, 239, 241, 422, 478, 618, 626
FaqI GGGAC 2 cut(s) 207, 417
FauNDI CATATG 1 cut(s) 239
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 47, 482, 611
FspI TGCGCA 1 cut(s) 495
GlaI GCGC 4 cut(s) 55, 255, 312, 495
GluI GCNGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 2 cut(s) 72, 428
HapII CCGG 4 cut(s) 26, 96, 246, 303
HhaI GCGC 4 cut(s) 56, 256, 313, 496
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 4 cut(s) 54, 254, 311, 494
HinP1I GCGC 4 cut(s) 54, 254, 311, 494
HincII GTYRAC 2 cut(s) 210, 417
HindII GTYRAC 2 cut(s) 210, 417
HinfI GANTC 5 cut(s) 172, 206, 290, 347, 405
HpaII CCGG 4 cut(s) 26, 96, 246, 303
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 5 cut(s) 82, 210, 235, 417, 503
Hpy188I TCNGA 3 cut(s) 177, 189, 445
Hpy188III TCNNGA 5 cut(s) 14, 26, 246, 303, 557
Hpy8I GTNNAC 5 cut(s) 82, 210, 235, 417, 503
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 158, 198, 214
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 567
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 341, 530
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 4 cut(s) 54, 254, 311, 494
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 3 cut(s) 25, 245, 302
Kzo9I GATC 3 cut(s) 86, 535, 553
LmnI GCTCC 2 cut(s) 275, 332
LweI GCATC 2 cut(s) 122, 638
MaeI CTAG 3 cut(s) 47, 482, 611
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 88, 537, 555
MboI GATC 3 cut(s) 86, 535, 553
MboII GAAGA 5 cut(s) 29, 432, 457, 460, 577
MfeI CAATTG 1 cut(s) 589
MflI RGATCY 1 cut(s) 553
MluCI AATT 1 cut(s) 589
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 215, 399
MnlI CCTC 7 cut(s) 138, 276, 333, 401, 553, 633, 636
MroI TCCGGA 3 cut(s) 25, 245, 302
MspI CCGG 4 cut(s) 26, 96, 246, 303
MunI CAATTG 1 cut(s) 589
Mva1269I GAATGC 2 cut(s) 278, 335
MwoI GCNNNNNNNGC 3 cut(s) 284, 341, 530
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 1 cut(s) 239
NdeII GATC 3 cut(s) 86, 535, 553
NlaIV GGNNCC 2 cut(s) 55, 195
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 214
NsbI TGCGCA 1 cut(s) 495
PctI GAATGC 2 cut(s) 278, 335
PfeI GAWTC 3 cut(s) 172, 290, 347
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 214, 399
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 2 cut(s) 214, 399
Psp1406I AACGTT 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 55, 195
PspPI GGNCC 3 cut(s) 79, 194, 243
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
SalI GTCGAC 1 cut(s) 208
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 3 cut(s) 86, 535, 553
Sau96I GGNCC 3 cut(s) 79, 194, 243
SchI GAGTC 2 cut(s) 215, 399
SetI ASST 7 cut(s) 81, 149, 170, 185, 450, 502, 581
SfaNI GCATC 2 cut(s) 122, 638
SfcI CTRYAG 1 cut(s) 154
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 3 cut(s) 79, 194, 243
Sse9I AATT 1 cut(s) 589
SsiI CCGC 7 cut(s) 99, 111, 140, 221, 224, 287, 344
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 3 cut(s) 47, 482, 611
TaaI ACNGT 3 cut(s) 158, 198, 214
TaiI ACGT 1 cut(s) 185
TaqI TCGA 3 cut(s) 15, 170, 209
TasI AATT 1 cut(s) 589
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 3 cut(s) 172, 290, 347
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 3 cut(s) 79, 194, 243
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 3 cut(s) 47, 482, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.