Rmu_sc0000347.1_g000038

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000347.1
OG0000191
Physical Location & Seq
Forward (+)
130966 .. 133872
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000347.1_g000038.1.cds

Sequence Viewer

Length: 1101 bp
atggctacttctcacgaagaatctctggagacccaaaccccactcatagacgacgtcgtagacagcgccgttgactacaaaggccatccggtccacagatccacctccggcggttggcgttccgcatccttcataataggggtggaagttgcggagaggttcgcatactatgggattagctccaatctgataacgtttctgacggggccgttgggacagtcgacggtgacggcggcggagaatgtgaacatatggtccggaacatcgttcttgtttcctctattgggagcgttcgtggcggattcttttctcgataatttgaagaaaaaagggaaggtgtgtaccatcgctgaggttgaggaagcaaaggctgttctgaggctgtttccaatatgggctacatgcttgccatattctattgtatttgcacagtacactactttcttcaccaagcaaggtgctaccatggacagaactattgtgcccggttttgacataccggctgcttcacttcagtcatttatctgccttgccataataatgatcatacccgtttatgaccgcatttttgttccaatggcaagagctttcaccagagaaccctttggaattacaatgctacaaagaatcggaactgggatgtttttctctatcatatctatggtcgttgcagctttagttgagatgaaaaggctccaaactgccaaagattatgatctggttgatctgccaagtgctacaattccaatgagtatttggtggttggttcctcagtactgtttgtatggactagccgatgttttcaccattgttggtctacaagagttcctctatgatcaggtaccaaatgaattaagaagcatgggaattgctctctacctcagtatattgggtgtgggaaactttctgagcagctttcttatctctattattgaggaagcaaccagttggggaggccacactagctggttttccgacaaccttaatcttgcacatcttgattacttttactggttactagcagcactctgtggagtaggattgttggcctacatgtattttgcaaaatcttacatttacaatagggctagtacaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

366

Amino Acids

40.66

Weight (kDa)

5.05

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 841
AccB1I GGYRCC 1 cut(s) 841
AccI GTMKAC 3 cut(s) 60, 221, 817
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 7 cut(s) 111, 123, 152, 233, 236, 299, 562
AclI AACGTT 1 cut(s) 194
AclWI GGATC 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 1031
AfaI GTAC 5 cut(s) 343, 434, 776, 843, 1093
AfiI CCNNNNNNNGG 2 cut(s) 114, 284
AflIII ACRYGT 1 cut(s) 1053
AgsI TTSAA 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 5 cut(s) 180, 587, 674, 915, 966
AluI AGCT 5 cut(s) 180, 587, 674, 915, 966
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 4 cut(s) 82, 206, 955, 1047
ApeKI GCWGC 4 cut(s) 503, 671, 912, 1022
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp718I GGTACC 1 cut(s) 841
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 3 cut(s) 91, 206, 255
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 4 cut(s) 238, 439, 583, 796
AvaII GGWCC 2 cut(s) 91, 255
BaeGI GKGCMC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 841
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 490, 683, 924, 1034
BccI CCATC 2 cut(s) 93, 353
BceAI ACGGC 3 cut(s) 53, 193, 246
BclI TGATCA 2 cut(s) 543, 835
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 4 cut(s) 791, 963, 1019, 1089
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 5 cut(s) 234, 504, 672, 913, 1023
BlsI GCNGC 5 cut(s) 235, 505, 673, 914, 1024
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 2 cut(s) 91, 255
BmgT120I GGNCC 3 cut(s) 91, 206, 255
BmiI GGNNCC 4 cut(s) 207, 695, 768, 843
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 2 cut(s) 88, 257
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 284
Bse118I RCCGGY 1 cut(s) 499
Bse1I ACTGG 3 cut(s) 640, 945, 1016
Bse8I GATNNNNATC 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 3 cut(s) 85, 125, 645
BseJI GATNNNNATC 1 cut(s) 714
BseLI CCNNNNNNNGG 2 cut(s) 114, 284
BseMII CTCAG 5 cut(s) 342, 368, 785, 895, 899
BseNI ACTGG 3 cut(s) 640, 945, 1016
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 4 cut(s) 490, 683, 924, 1034
BshFI GGCC 4 cut(s) 84, 208, 957, 1049
BshNI GGYRCC 1 cut(s) 841
BsiSI CCGG 5 cut(s) 89, 108, 258, 486, 500
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 114, 284
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 4 cut(s) 84, 208, 957, 1049
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 486
Bsp13I TCCGGA 1 cut(s) 257
Bsp143I GATC 5 cut(s) 98, 543, 715, 724, 835
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 7 cut(s) 111, 123, 152, 233, 236, 299, 562
BspANI GGCC 4 cut(s) 84, 208, 957, 1049
BspCNI CTCAG 5 cut(s) 343, 369, 784, 894, 900
BspEI TCCGGA 1 cut(s) 257
BspLI GGNNCC 4 cut(s) 207, 695, 768, 843
BspPI GGATC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 841
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 499
BsrI ACTGG 3 cut(s) 640, 945, 1016
BssAI RCCGGY 1 cut(s) 499
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 5 cut(s) 98, 543, 715, 724, 835
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 4 cut(s) 219, 226, 432, 779
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 5 cut(s) 351, 377, 771, 881, 908
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 3 cut(s) 85, 125, 645
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 101, 546, 718, 727, 838
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 5 cut(s) 98, 543, 715, 724, 835
BstMWI GCNNNNNNNGC 2 cut(s) 296, 963
BstNSI RCATGY 2 cut(s) 405, 1057
BstSCI CCNGG 1 cut(s) 484
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 4 cut(s) 490, 683, 924, 1034
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuRI GGCC 4 cut(s) 84, 208, 957, 1049
BtgI CCRYGG 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 85, 125, 645
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 499
Cfr13I GGNCC 3 cut(s) 91, 206, 255
Csp6I GTAC 5 cut(s) 342, 433, 775, 842, 1092
CviAII CATG 4 cut(s) 402, 466, 862, 1054
CviQI GTAC 5 cut(s) 342, 433, 775, 842, 1092
DdeI CTNAG 5 cut(s) 351, 377, 771, 881, 908
DpnI GATC 5 cut(s) 100, 545, 717, 726, 837
DpnII GATC 5 cut(s) 98, 543, 715, 724, 835
DraIII CACNNNGTG 1 cut(s) 1031
EciI GGCGGA 2 cut(s) 251, 314
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 91, 255
Eco57I CTGAAG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 405, 469, 865, 1057
FaqI GGGAC 1 cut(s) 228
FatI CATG 4 cut(s) 401, 465, 861, 1053
FauNDI CATATG 1 cut(s) 251
FbaI TGATCA 2 cut(s) 543, 835
FblI GTMKAC 3 cut(s) 60, 221, 817
Fnu4HI GCNGC 5 cut(s) 234, 504, 672, 913, 1023
FokI GGATG 3 cut(s) 72, 112, 652
Fsp4HI GCNGC 5 cut(s) 234, 504, 672, 913, 1023
FspBI CTAG 4 cut(s) 791, 963, 1019, 1089
GlaI GCGC 1 cut(s) 67
GluI GCNGC 5 cut(s) 234, 504, 672, 913, 1023
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 4 cut(s) 84, 208, 957, 1049
HapII CCGG 5 cut(s) 89, 108, 258, 486, 500
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 4 cut(s) 405, 469, 865, 1057
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 73, 222
HindII GTYRAC 2 cut(s) 73, 222
HinfI GANTC 3 cut(s) 20, 302, 627
HpaII CCGG 5 cut(s) 89, 108, 258, 486, 500
HphI GGTGA 4 cut(s) 238, 439, 583, 796
Hpy166II GTNNAC 8 cut(s) 61, 73, 94, 222, 247, 342, 435, 818
Hpy188I TCNGA 6 cut(s) 189, 201, 378, 632, 909, 976
Hpy188III TCNNGA 5 cut(s) 14, 26, 258, 311, 998
Hpy8I GTNNAC 8 cut(s) 61, 73, 94, 222, 247, 342, 435, 818
Hpy99I CGWCG 3 cut(s) 56, 59, 226
HpyAV CCTTC 2 cut(s) 139, 328
HpyCH4III ACNGT 4 cut(s) 219, 226, 432, 779
HpyCH4IV ACGT 2 cut(s) 54, 194
HpyCH4V TGCA 4 cut(s) 428, 671, 992, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 963
HpyF3I CTNAG 5 cut(s) 351, 377, 771, 881, 908
HpySE526I ACGT 2 cut(s) 54, 194
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 4 cut(s) 405, 469, 865, 1057
HspAI GCGC 1 cut(s) 66
Kpn2I TCCGGA 1 cut(s) 257
KpnI GGTACC 1 cut(s) 845
Ksp22I TGATCA 2 cut(s) 543, 835
Kzo9I GATC 5 cut(s) 98, 543, 715, 724, 835
LmnI GCTCC 3 cut(s) 185, 287, 699
Lsp1109I GCAGC 4 cut(s) 490, 683, 924, 1034
LweI GCATC 1 cut(s) 134
MaeI CTAG 4 cut(s) 791, 963, 1019, 1089
MaeII ACGT 2 cut(s) 54, 194
MaeIII GTNAC 2 cut(s) 226, 1014
MalI GATC 5 cut(s) 100, 545, 717, 726, 837
MboI GATC 5 cut(s) 98, 543, 715, 724, 835
MboII GAAGA 3 cut(s) 29, 334, 436
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 5 cut(s) 316, 609, 741, 851, 867
MmeI TCCRAC 1 cut(s) 999
MroI TCCGGA 1 cut(s) 257
MseI TTAA 2 cut(s) 854, 984
MslI CAYNNNNRTG 2 cut(s) 539, 659
MspI CCGG 5 cut(s) 89, 108, 258, 486, 500
MspR9I CCNGG 1 cut(s) 486
MwoI GCNNNNNNNGC 2 cut(s) 296, 963
NciI CCSGG 1 cut(s) 486
NcoI CCATGG 1 cut(s) 465
NdeI CATATG 1 cut(s) 251
NdeII GATC 5 cut(s) 98, 543, 715, 724, 835
NlaIII CATG 4 cut(s) 405, 469, 865, 1057
NlaIV GGNNCC 4 cut(s) 207, 695, 768, 843
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 2 cut(s) 405, 1057
PciI ACATGT 1 cut(s) 1053
PfeI GAWTC 3 cut(s) 20, 302, 627
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 5 cut(s) 235, 505, 673, 914, 1024
PscI ACATGT 1 cut(s) 1053
Psp1406I AACGTT 1 cut(s) 194
PspN4I GGNNCC 4 cut(s) 207, 695, 768, 843
PspPI GGNCC 3 cut(s) 91, 206, 255
PsuI RGATCY 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 5 cut(s) 343, 434, 776, 843, 1093
RsaNI GTAC 5 cut(s) 342, 433, 775, 842, 1092
RseI CAYNNNNRTG 2 cut(s) 539, 659
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 2 cut(s) 854, 984
SatI GCNGC 5 cut(s) 234, 504, 672, 913, 1023
Sau3AI GATC 5 cut(s) 98, 543, 715, 724, 835
Sau96I GGNCC 3 cut(s) 91, 206, 255
ScaI AGTACT 1 cut(s) 776
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 1 cut(s) 134
SinI GGWCC 2 cut(s) 91, 255
SmiMI CAYNNNNRTG 2 cut(s) 539, 659
Sse9I AATT 5 cut(s) 316, 609, 741, 851, 867
SsiI CCGC 7 cut(s) 111, 123, 152, 233, 236, 299, 562
SspMI CTAG 4 cut(s) 791, 963, 1019, 1089
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 219, 226, 432, 779
TaiI ACGT 2 cut(s) 57, 197
TaqI TCGA 2 cut(s) 221, 312
TasI AATT 5 cut(s) 316, 609, 741, 851, 867
TatI WGTACW 3 cut(s) 432, 774, 1091
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 20, 302, 627
Tru1I TTAA 2 cut(s) 854, 984
Tru9I TTAA 2 cut(s) 854, 984
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 503, 671, 912, 1022
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 121, 701, 864
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 91, 255
XceI RCATGY 2 cut(s) 405, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XmiI GTMKAC 3 cut(s) 60, 221, 817
XspI CTAG 4 cut(s) 791, 963, 1019, 1089
ZraI GACGTC 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.