Rmu_sc0001930.1_g000001

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001930.1
OG0000191
Physical Location & Seq
Reverse (-)
1 .. 473
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001930.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atggctacatctctcgaagaatctccggagacccgaactccactcctagacgacgtcgtagacggcgccgttgactgcaaagggcatccggtcctcagatccacctcaggcggttggctttccgcatcgttcataataggagtggaagttgcggagaggtctgcctactatggaataagctcgaatctgataacgtttctgacggggccgttgggacagtcgacggcgacggcggcggagaatgtgaacatatggttcggaacggcgtcgttgcttcctctattgggagcgttcgtggcggattcttttctcggacgctaccgcaccattattgctgcttctctcctctacattttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

119

Amino Acids

12.57

Weight (kDa)

4.53

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 2 cut(s) 60, 221
AccIII TCCGGA 1 cut(s) 25
AciI CCGC 7 cut(s) 111, 123, 152, 233, 236, 299, 322
AclI AACGTT 1 cut(s) 194
AclWI GGATC 1 cut(s) 93
AcyI GRCGYC 3 cut(s) 54, 66, 266
AfiI CCNNNNNNNGG 1 cut(s) 284
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 91, 206
AvaII GGWCC 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 106
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 322
BceAI ACGGC 6 cut(s) 53, 79, 193, 240, 246, 279
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 2 cut(s) 234, 336
BlsI GCNGC 2 cut(s) 235, 337
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 91, 206
BmiI GGNNCC 2 cut(s) 67, 207
BmsI GCATC 2 cut(s) 94, 134
BsaHI GRCGYC 3 cut(s) 54, 66, 266
BsaI GGTCTC 1 cut(s) 23
BsaWI WCCGGW 2 cut(s) 25, 88
BsaXI ACNNNNNCTCC 6 cut(s) 22, 52, 132, 162, 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse21I CCTNAGG 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 25
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 109, 120
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 26, 89
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 7 cut(s) 111, 123, 152, 233, 236, 299, 322
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 108, 119
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 67, 207
BspPI GGATC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 23
BssMI GATC 1 cut(s) 98
BssNI GRCGYC 3 cut(s) 54, 66, 266
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 3 cut(s) 54, 66, 266
BstDEI CTNAG 2 cut(s) 95, 106
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 233, 296
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 85
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 91, 206
CseI GACGC 2 cut(s) 255, 324
CviJI RGCY 4 cut(s) 5, 118, 180, 208
CviKI_1 RGCY 4 cut(s) 5, 118, 180, 208
DdeI CTNAG 2 cut(s) 95, 106
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EciI GGCGGA 2 cut(s) 251, 314
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 106
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaiI YATR 4 cut(s) 134, 171, 251, 253
FaqI GGGAC 1 cut(s) 228
FauNDI CATATG 1 cut(s) 251
FblI GTMKAC 2 cut(s) 60, 221
Fnu4HI GCNGC 2 cut(s) 234, 336
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 234, 336
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 234, 336
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 26, 89
HgaI GACGC 2 cut(s) 255, 324
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 3 cut(s) 54, 66, 266
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 73, 222
HindII GTYRAC 2 cut(s) 73, 222
HinfI GANTC 3 cut(s) 20, 184, 302
HpaII CCGG 2 cut(s) 26, 89
Hpy166II GTNNAC 4 cut(s) 61, 73, 222, 247
Hpy188I TCNGA 5 cut(s) 98, 189, 201, 260, 314
Hpy188III TCNNGA 2 cut(s) 14, 26
Hpy8I GTNNAC 4 cut(s) 61, 73, 222, 247
Hpy99I CGWCG 5 cut(s) 56, 59, 226, 232, 271
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 54, 194
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 296
HpyF3I CTNAG 2 cut(s) 95, 106
HpySE526I ACGT 2 cut(s) 54, 194
Hsp92I GRCGYC 3 cut(s) 54, 66, 266
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 3 cut(s) 39, 93, 102
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 2 cut(s) 94, 134
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 54, 194
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 98
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 5 cut(s) 104, 115, 150, 288, 356
MroI TCCGGA 1 cut(s) 25
MspI CCGG 2 cut(s) 26, 89
MwoI GCNNNNNNNGC 2 cut(s) 233, 296
NarI GGCGCC 1 cut(s) 66
NdeI CATATG 1 cut(s) 251
NdeII GATC 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 67, 207
PfeI GAWTC 3 cut(s) 20, 184, 302
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 235, 337
PluTI GGCGCC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 67, 207
PspPI GGNCC 2 cut(s) 91, 206
PsuI RGATCY 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 220
SatI GCNGC 2 cut(s) 234, 336
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 91, 206
SetI ASST 5 cut(s) 57, 107, 161, 182, 197
SfaNI GCATC 2 cut(s) 94, 134
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 1 cut(s) 91
SsiI CCGC 7 cut(s) 111, 123, 152, 233, 236, 299, 322
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 57, 197
TaqI TCGA 3 cut(s) 15, 182, 221
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 20, 184, 302
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 91
XmiI GTMKAC 2 cut(s) 60, 221
XspI CTAG 1 cut(s) 47
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.