Rmu_sc0036408.1_g000001

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036408.1
OG0000191
Physical Location & Seq
Reverse (-)
1 .. 3060
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036408.1_g000001.1.cds

Sequence Viewer

Length: 1003 bp
atgctgttgctggtgactgcttgtgtttcccctaccatcagcatttcgaaaggtggaatggtcgtgcctgaccgcacctccttttttgctgttgcgcaaggtggacacaagccctgtgttcaggcttttggggcagatcagtttgatggacaagatccagaggagtgcaaagcgaaaagctccttcttcaattggtggttcctcaacaaagccttgcttgcaccagatgatttgaagaaaaacgggaaggtgtgtaccatcgctgaggttgaggaagcaaaggctgttcttaggctgtttccaatatgggctacatgcttggcatatgctattgtatttgcacagtccactactgtgttcaccaagcaaggtgccaccatggacagaactattgtccccggtttcgacataccagctgcttcacttcagtcatttatcagccttgccataataatagtcatacccatgtatgaccgcatttttgttccaatggcaagagctttcactagagagccctctggcattacaatgctacaaagaatcggaactgggatgtttttctctatcatttctatggttgttgcagctttagttgagataaaaaggctccaaactgcgaaagattatgatctggttgatctgccaagtgccacaattccaatgagtatttggtggttagttcctcagtacttcttgtatgggctagccgatgctttcaccatggttggtctacaagagttcttctacgatcaggtaccaaatgaattaagaagcgtaggacttgccctctacctcagtatatttggtgtgggaagctttctgagcagctttcttatctctattattgaggaagcaaccagttgggcaggccacactagctggttttccgataacctgaatcttgcacatcttgattacttttactggttacttgcagcactcagtgcagtaggattgttggtctacttgtattttgcaaaatcttacatttataacagggctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

334

Amino Acids

37.08

Weight (kDa)

5.43

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 993
Acc16I TGCGCA 1 cut(s) 96
Acc65I GGTACC 1 cut(s) 754
AccB1I GGYRCC 2 cut(s) 371, 754
AccI GTMKAC 2 cut(s) 730, 963
AciI CCGC 2 cut(s) 73, 475
AclWI GGATC 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 944
AfaI GTAC 3 cut(s) 256, 689, 756
AgsI TTSAA 2 cut(s) 190, 235
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 7 cut(s) 180, 416, 500, 587, 816, 828, 879
AluI AGCT 7 cut(s) 180, 416, 500, 587, 816, 828, 879
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 868
ApeKI GCWGC 4 cut(s) 416, 584, 825, 935
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
Asp718I GGTACC 1 cut(s) 754
AspLEI GCGC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 3 cut(s) 25, 352, 709
AsuII TTCGAA 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 703
BanI GGYRCC 2 cut(s) 371, 754
BanII GRGCYC 1 cut(s) 516
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 403, 596, 837, 947
BccI CCATC 3 cut(s) 44, 140, 266
BcnI CCSGG 1 cut(s) 399
BfaI CTAG 3 cut(s) 507, 704, 876
BisI GCNGC 4 cut(s) 417, 585, 826, 936
BlsI GCNGC 4 cut(s) 418, 586, 827, 937
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 1 cut(s) 399
BmiI GGNNCC 4 cut(s) 200, 373, 608, 756
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 700
BmtI GCTAGC 1 cut(s) 707
BmuI ACTGGG 1 cut(s) 558
Bpu10I CCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 3 cut(s) 378, 397, 720
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 3 cut(s) 553, 858, 929
Bse8I GATNNNNATC 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 378, 397, 720
BseGI GGATG 1 cut(s) 558
BseJI GATNNNNATC 1 cut(s) 627
BseMII CTCAG 5 cut(s) 255, 698, 808, 812, 955
BseNI ACTGG 3 cut(s) 553, 858, 929
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 4 cut(s) 403, 596, 837, 947
BsgI GTGCAG 1 cut(s) 966
BshFI GGCC 1 cut(s) 870
BshNI GGYRCC 2 cut(s) 371, 754
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 870
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 5 cut(s) 136, 154, 628, 637, 748
Bsp19I CCATGG 2 cut(s) 378, 720
BspACI CCGC 2 cut(s) 73, 475
BspANI GGCC 1 cut(s) 870
BspCNI CTCAG 5 cut(s) 256, 697, 807, 813, 954
BspLI GGNNCC 4 cut(s) 200, 373, 608, 756
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 47
BspT107I GGYRCC 2 cut(s) 371, 754
BsrI ACTGG 3 cut(s) 553, 858, 929
BssECI CCNNGG 3 cut(s) 378, 397, 720
BssMI GATC 5 cut(s) 136, 154, 628, 637, 748
BssT1I CCWWGG 2 cut(s) 378, 720
Bst4CI ACNGT 2 cut(s) 345, 355
BstAPI GCANNNNNTGC 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 219, 705, 868
BstDEI CTNAG 6 cut(s) 264, 290, 684, 794, 821, 941
BstDSI CCRYGG 2 cut(s) 378, 720
BstF5I GGATG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 5 cut(s) 139, 157, 631, 640, 751
BstMBI GATC 5 cut(s) 136, 154, 628, 637, 748
BstMWI GCNNNNNNNGC 5 cut(s) 131, 218, 822, 876, 944
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 4 cut(s) 403, 596, 837, 947
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 1 cut(s) 870
BtgI CCRYGG 2 cut(s) 378, 720
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 949
Cac8I GCNNGC 3 cut(s) 219, 705, 868
CfoI GCGC 1 cut(s) 97
Csp6I GTAC 3 cut(s) 255, 688, 755
CviAII CATG 4 cut(s) 315, 379, 466, 721
CviQI GTAC 3 cut(s) 255, 688, 755
DdeI CTNAG 6 cut(s) 264, 290, 684, 794, 821, 941
DpnI GATC 5 cut(s) 138, 156, 630, 639, 750
DpnII GATC 5 cut(s) 136, 154, 628, 637, 748
DraIII CACNNNGTG 1 cut(s) 944
Eco130I CCWWGG 2 cut(s) 378, 720
Eco24I GRGCYC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 410
EcoT14I CCWWGG 2 cut(s) 378, 720
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 378, 720
FaeI CATG 4 cut(s) 318, 382, 469, 724
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 314, 378, 465, 720
FauNDI CATATG 1 cut(s) 325
FblI GTMKAC 2 cut(s) 730, 963
Fnu4HI GCNGC 4 cut(s) 417, 585, 826, 936
FokI GGATG 1 cut(s) 565
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 4 cut(s) 417, 585, 826, 936
FspBI CTAG 3 cut(s) 507, 704, 876
FspI TGCGCA 1 cut(s) 96
GlaI GCGC 1 cut(s) 96
GluI GCNGC 4 cut(s) 417, 585, 826, 936
HaeIII GGCC 1 cut(s) 870
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 97
Hin1II CATG 4 cut(s) 318, 382, 469, 724
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 2 cut(s) 540, 898
HpaII CCGG 1 cut(s) 399
HphI GGTGA 3 cut(s) 25, 352, 709
Hpy166II GTNNAC 6 cut(s) 104, 255, 348, 360, 731, 964
Hpy188I TCNGA 3 cut(s) 545, 822, 889
Hpy188III TCNNGA 2 cut(s) 158, 911
Hpy8I GTNNAC 6 cut(s) 104, 255, 348, 360, 731, 964
HpyAV CCTTC 2 cut(s) 193, 241
HpyCH4III ACNGT 2 cut(s) 345, 355
HpyCH4V TGCA 8 cut(s) 168, 221, 341, 584, 905, 935, 947, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 218, 822, 876, 944
HpyF3I CTNAG 6 cut(s) 264, 290, 684, 794, 821, 941
Hsp92II CATG 4 cut(s) 318, 382, 469, 724
HspAI GCGC 1 cut(s) 95
KpnI GGTACC 1 cut(s) 758
Kzo9I GATC 5 cut(s) 136, 154, 628, 637, 748
LmnI GCTCC 2 cut(s) 185, 612
Lsp1109I GCAGC 4 cut(s) 403, 596, 837, 947
LweI GCATC 1 cut(s) 700
MaeI CTAG 3 cut(s) 507, 704, 876
MaeIII GTNAC 2 cut(s) 13, 927
MalI GATC 5 cut(s) 138, 156, 630, 639, 750
MboI GATC 5 cut(s) 136, 154, 628, 637, 748
MboII GAAGA 3 cut(s) 178, 247, 733
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 3 cut(s) 190, 654, 764
MseI TTAA 1 cut(s) 767
MslI CAYNNNNRTG 4 cut(s) 353, 464, 527, 572
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 190
MwoI GCNNNNNNNGC 5 cut(s) 131, 218, 822, 876, 944
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 2 cut(s) 378, 720
NdeI CATATG 1 cut(s) 325
NdeII GATC 5 cut(s) 136, 154, 628, 637, 748
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 4 cut(s) 318, 382, 469, 724
NlaIV GGNNCC 4 cut(s) 200, 373, 608, 756
NmuCI GTSAC 1 cut(s) 13
NsbI TGCGCA 1 cut(s) 96
NspI RCATGY 1 cut(s) 318
NspV TTCGAA 1 cut(s) 47
OliI CACNNNNGTG 1 cut(s) 353
PfeI GAWTC 2 cut(s) 540, 898
PkrI GCNGC 4 cut(s) 418, 586, 827, 937
PsiI TTATAA 1 cut(s) 993
PspN4I GGNNCC 4 cut(s) 200, 373, 608, 756
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 256, 689, 756
RsaNI GTAC 3 cut(s) 255, 688, 755
RseI CAYNNNNRTG 4 cut(s) 353, 464, 527, 572
SaqAI TTAA 1 cut(s) 767
SatI GCNGC 4 cut(s) 417, 585, 826, 936
Sau3AI GATC 5 cut(s) 136, 154, 628, 637, 748
ScaI AGTACT 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 516
SfaNI GCATC 1 cut(s) 700
SfuI TTCGAA 1 cut(s) 47
SmiMI CAYNNNNRTG 4 cut(s) 353, 464, 527, 572
Sse9I AATT 3 cut(s) 190, 654, 764
SsiI CCGC 2 cut(s) 73, 475
SspMI CTAG 3 cut(s) 507, 704, 876
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 378, 720
TaaI ACNGT 2 cut(s) 345, 355
TaqI TCGA 2 cut(s) 47, 405
TasI AATT 3 cut(s) 190, 654, 764
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 2 cut(s) 540, 898
Tru1I TTAA 1 cut(s) 767
Tru9I TTAA 1 cut(s) 767
TscAI CASTG 1 cut(s) 949
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 4 cut(s) 416, 584, 825, 935
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 777
TspRI CASTG 1 cut(s) 949
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 666
XmiI GTMKAC 2 cut(s) 730, 963
XspI CTAG 3 cut(s) 507, 704, 876
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.