FvH4_6g12331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000191
Physical Location & Seq
Forward (+)
7444324 .. 7444863
540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12331.t1

Sequence Viewer

Length: 279 bp
ATGAAGAACTTGGTGTCGGATCGCAGTTTTTTCATTGACAGTGAAGAAGAAGATGATGAGGCAAAGGACAACATAATGATTCTGATTCTTCGGGTTCGGAAGCCTATCACTGCCAGCAGCAGTAGCAGCAGCAGATTCAGCTCAGTTCTTACAACACCCAAAAGCCTCAGAGTTACAGTTGGCATCTCTAAACTTTATGGAGCTCTTTCAAGGATCAGGATCCTCTCGTTGGCTATTAATGGTGTTTGGGTATCCTCAGCTTTTCATCTCAGCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

9.98

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 27, 214, 221, 227
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 3 cut(s) 141, 203, 260
AluI AGCT 3 cut(s) 141, 203, 260
Alw21I GWGCWC 1 cut(s) 205
AlwI GGATC 4 cut(s) 27, 214, 221, 227
ApeKI GCWGC 3 cut(s) 117, 126, 129
AseI ATTAAT 1 cut(s) 237
BamHI GGATCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 129, 138, 141
BceAI ACGGC 1 cut(s) 258
BciVI GTATCC 1 cut(s) 262
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 3 cut(s) 118, 127, 130
BlsI GCNGC 3 cut(s) 119, 128, 131
BmiI GGNNCC 1 cut(s) 221
BmsI GCATC 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 218
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 156, 181, 270
BseXI GCAGC 3 cut(s) 129, 138, 141
BsiHKAI GWGCWC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 19, 213, 219
BspCNI CTCAG 3 cut(s) 155, 180, 269
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 4 cut(s) 27, 214, 221, 227
BssMI GATC 3 cut(s) 19, 213, 219
Bst4CI ACNGT 2 cut(s) 41, 178
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 4 cut(s) 142, 167, 256, 269
BstKTI GATC 3 cut(s) 22, 216, 222
BstMBI GATC 3 cut(s) 19, 213, 219
BstMWI GCNNNNNNNGC 3 cut(s) 123, 126, 138
BstV1I GCAGC 3 cut(s) 129, 138, 141
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuI GTATCC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 46, 108
Cac8I GCNNGC 1 cut(s) 115
CviJI RGCY 7 cut(s) 103, 141, 165, 203, 233, 260, 273
CviKI_1 RGCY 7 cut(s) 103, 141, 165, 203, 233, 260, 273
DdeI CTNAG 4 cut(s) 142, 167, 256, 269
DpnI GATC 3 cut(s) 21, 215, 221
DpnII GATC 3 cut(s) 19, 213, 219
Ecl136II GAGCTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 205
FaiI YATR 2 cut(s) 74, 198
Fnu4HI GCNGC 3 cut(s) 118, 127, 130
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 3 cut(s) 118, 127, 130
GluI GCNGC 3 cut(s) 118, 127, 130
HinfI GANTC 3 cut(s) 79, 85, 135
Hpy188I TCNGA 4 cut(s) 19, 84, 99, 170
Hpy188III TCNNGA 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 41, 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 126, 138
HpyF3I CTNAG 4 cut(s) 142, 167, 256, 269
Kzo9I GATC 3 cut(s) 19, 213, 219
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 2 cut(s) 127, 202
Lsp1109I GCAGC 3 cut(s) 129, 138, 141
LweI GCATC 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 172
MalI GATC 3 cut(s) 21, 215, 221
MboI GATC 3 cut(s) 19, 213, 219
MboII GAAGA 5 cut(s) 16, 56, 59, 62, 80
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 205
MnlI CCTC 4 cut(s) 52, 176, 233, 265
MseI TTAA 2 cut(s) 237, 277
MwoI GCNNNNNNNGC 3 cut(s) 123, 126, 138
NdeII GATC 3 cut(s) 19, 213, 219
NlaIV GGNNCC 1 cut(s) 221
PfeI GAWTC 3 cut(s) 79, 85, 135
PkrI GCNGC 3 cut(s) 119, 128, 131
PshBI ATTAAT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 219
SacI GAGCTC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 237, 277
SatI GCNGC 3 cut(s) 118, 127, 130
Sau3AI GATC 3 cut(s) 19, 213, 219
SduI GDGCHC 1 cut(s) 205
SetI ASST 3 cut(s) 143, 205, 262
SfaNI GCATC 1 cut(s) 192
SgeI CNNG 6 cut(s) 22, 104, 126, 222, 229, 238
SstI GAGCTC 1 cut(s) 205
TaaI ACNGT 2 cut(s) 41, 178
TfiI GAWTC 3 cut(s) 79, 85, 135
Tru1I TTAA 2 cut(s) 237, 277
Tru9I TTAA 2 cut(s) 237, 277
TscAI CASTG 2 cut(s) 46, 115
TseI GCWGC 3 cut(s) 117, 126, 129
TspDTI ATGAA 3 cut(s) 17, 22, 254
TspRI CASTG 2 cut(s) 46, 115
VspI ATTAAT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.