Rh7DG391900

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000191
Physical Location & Seq
Reverse (-)
53637185 .. 53640236
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG391900.1

Sequence Viewer

Length: 354 bp
ATGGCCCCTTCTCCGGAGACCCAAACTCCGCTCCTAGACGACGTCGTGGAGGGCGCCGTTGACTGCAACGGCCATCCGGTCCGAAGATCCAGCTCCGGCGGTTGGCGTTCCGCATCTTTCATAATATGGGTGGAGGTTGCGGAGAGGGTTGCCTACTATGGAATCAGCTCCAACCTCATATCGTTTCTGACCGGGCCTATGGGACAGTCCACGGCCACCGCGGCCAAGAACGTCAACATATGGTCTGGAACGGCGTCGTTGCTTCCTCTATTGGGAGCTTTCGTTGCTGATTCTTTCCTGGGTCGCTACCGCACCATTGTCGCCGCTTCTCTCCTCTACATCATGGTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

117

Amino Acids

12.45

Weight (kDa)

5.64

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 53
AccBSI CCGCTC 1 cut(s) 31
AccII CGCG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 8 cut(s) 29, 99, 111, 140, 219, 221, 310, 324
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 3 cut(s) 70, 213, 222
AcyI GRCGYC 3 cut(s) 42, 54, 254
AfiI CCNNNNNNNGG 3 cut(s) 13, 102, 272
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 93, 168, 278
AluI AGCT 3 cut(s) 93, 168, 278
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 5 cut(s) 3, 70, 194, 213, 222
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 4, 79, 194
AsuC2I CCSGG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 351
BccI CCATC 1 cut(s) 81
BceAI ACGGC 4 cut(s) 41, 85, 228, 267
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 35, 352
BfoI RGCGCY 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 2 cut(s) 222, 324
BlsI GCNGC 2 cut(s) 223, 325
Bme1390I CCNGG 2 cut(s) 193, 299
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 4, 79, 194
BmiI GGNNCC 2 cut(s) 6, 55
BmrFI CCNGG 2 cut(s) 193, 299
BmsI GCATC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 193
BsaHI GRCGYC 3 cut(s) 42, 54, 254
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 210, 219, 298
BsaWI WCCGGW 2 cut(s) 13, 76
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 267, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 102, 272
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 3 cut(s) 210, 219, 298
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 13, 102, 272
BseRI GAGGAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 5 cut(s) 5, 72, 196, 215, 224
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 4 cut(s) 14, 77, 96, 192
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 3 cut(s) 13, 102, 272
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 5 cut(s) 5, 72, 196, 215, 224
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 351
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 8 cut(s) 29, 99, 111, 140, 219, 221, 310, 324
BspANI GGCC 5 cut(s) 5, 72, 196, 215, 224
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 6, 55
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 210, 219, 298
BssMI GATC 1 cut(s) 86
BssNI GRCGYC 3 cut(s) 42, 54, 254
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 207
BstACI GRCGYC 3 cut(s) 42, 54, 254
BstDSI CCRYGG 2 cut(s) 210, 219
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 86
BstMWI GCNNNNNNNGC 2 cut(s) 221, 284
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 191, 297
BstUI CGCG 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 5 cut(s) 5, 72, 196, 215, 224
BtgI CCRYGG 2 cut(s) 210, 219
BtsCI GGATG 1 cut(s) 73
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 4, 79, 194
Cfr42I CCGCGG 1 cut(s) 222
CpoI CGGWCCG 1 cut(s) 79
CseI GACGC 1 cut(s) 243
CspI CGGWCCG 1 cut(s) 79
CviAII CATG 1 cut(s) 343
CviJI RGCY 8 cut(s) 5, 72, 93, 168, 196, 215, 224, 278
CviKI_1 RGCY 8 cut(s) 5, 72, 93, 168, 196, 215, 224, 278
DinI GGCGCC 1 cut(s) 55
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
EaeI YGGCCR 3 cut(s) 70, 213, 222
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 1 cut(s) 346
FaiI YATR 8 cut(s) 122, 127, 159, 179, 200, 239, 241, 344
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 342
FauNDI CATATG 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 222, 324
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 222, 324
FspBI CTAG 2 cut(s) 35, 352
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 222, 324
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 5 cut(s) 5, 72, 196, 215, 224
HapII CCGG 4 cut(s) 14, 77, 96, 192
HgaI GACGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 3 cut(s) 42, 54, 254
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 61, 235
HindII GTYRAC 2 cut(s) 61, 235
HinfI GANTC 2 cut(s) 162, 290
HpaII CCGG 4 cut(s) 14, 77, 96, 192
Hpy166II GTNNAC 3 cut(s) 61, 210, 235
Hpy188I TCNGA 2 cut(s) 83, 189
Hpy188III TCNNGA 2 cut(s) 14, 246
Hpy8I GTNNAC 3 cut(s) 61, 210, 235
Hpy99I CGWCG 3 cut(s) 44, 47, 259
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 42, 231
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 284
HpySE526I ACGT 2 cut(s) 42, 231
Hsp92I GRCGYC 3 cut(s) 42, 54, 254
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 13
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 86
LmnI GCTCC 4 cut(s) 36, 98, 173, 275
LpnPI CCDG 8 cut(s) 27, 90, 103, 109, 205, 231, 284, 311
LweI GCATC 1 cut(s) 122
MaeI CTAG 2 cut(s) 35, 352
MaeII ACGT 2 cut(s) 42, 231
MalI GATC 1 cut(s) 88
MbiI CCGCTC 1 cut(s) 31
MboI GATC 1 cut(s) 86
MboII GAAGA 1 cut(s) 96
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 351
Mly113I GGCGCC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 43, 127, 138, 185, 276, 344
MroI TCCGGA 1 cut(s) 13
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 4 cut(s) 14, 77, 96, 192
MspR9I CCNGG 2 cut(s) 193, 299
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 221, 284
NarI GGCGCC 1 cut(s) 54
NciI CCSGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 239
NdeII GATC 1 cut(s) 86
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 6, 55
PfeI GAWTC 2 cut(s) 162, 290
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 223, 325
PluTI GGCGCC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 6, 55
PspPI GGNCC 3 cut(s) 4, 79, 194
PsuI RGATCY 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 344
Rsr2I CGGWCCG 1 cut(s) 79
RsrII CGGWCCG 1 cut(s) 79
SacII CCGCGG 1 cut(s) 222
SatI GCNGC 2 cut(s) 222, 324
Sau3AI GATC 1 cut(s) 86
Sau96I GGNCC 3 cut(s) 4, 79, 194
ScrFI CCNGG 2 cut(s) 193, 299
SduI GDGCHC 1 cut(s) 351
SetI ASST 7 cut(s) 45, 95, 138, 170, 177, 234, 280
SfaNI GCATC 1 cut(s) 122
SfiI GGCCNNNNNGGCC 1 cut(s) 221
SfoI GGCGCC 1 cut(s) 55
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 344
SsiI CCGC 8 cut(s) 29, 99, 111, 140, 219, 221, 310, 324
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 2 cut(s) 35, 352
StyD4I CCNGG 2 cut(s) 191, 297
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 45, 234
TauI GCSGC 2 cut(s) 224, 326
TfiI GAWTC 2 cut(s) 162, 290
TspDTI ATGAA 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 2 cut(s) 35, 352
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.